BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945838

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22820.1 | Symbols:  | A20/AN1-like zinc finger family prote...   715    0.0  


> AT4G22820.1 | Symbols:  | A20/AN1-like zinc finger family protein 
| chr4:11987705-11989006 REVERSE LENGTH=925
Length=925

 Score =  715 bits (387),  Expect = 0.0
 Identities = 514/571 (90%), Gaps = 26/571 (5%)
 Strand=Plus/Plus

Query  15   AGAGTGATAATGGGATCGGAACAAAACGATAGCACAAGCTTCACGCAGTCGCAAGCTTCA  74
            ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  220  AGAGTAAGAATGGGATCGGAACAAAACGATAGCACAAGCTTCACGCAATCGCAAGCTTCA  279

Query  75   GAGCCAAAGCTATGTACTAAAGGATGTGGTTTCTTTGGATCACCATCAAACATGGATCTA  134
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| 
Sbjct  280  GAGCCAAAGCTATGTGTTAAAGGATGTGGTTTCTTTGGATCACCATCAAACATGGATCTC  339

Query  135  TGTTCGAAATGTTACAGAAGCATTTGTGCAGAGGAAGCTCAAACAGCAGTTG-TAAAAGC  193
            ||||| |||||||||||| |||||||||| |||||||||||||||||||||| | |||||
Sbjct  340  TGTTCTAAATGTTACAGAGGCATTTGTGCTGAGGAAGCTCAAACAGCAGTTGCT-AAAGC  398

Query  194  TGCTGTTGAAAAATCTTTCAAGCCATCTCCTCTTCCTCTTCCTTCTCGTAGTCTCTTCAT  253
            |||||||||||||||||||||| |  ||  || | | | | |  ||||||||||||||||
Sbjct  399  TGCTGTTGAAAAATCTTTCAAG-C--CT--TC-T-C-C-T-C--CTCGTAGTCTCTTCAT  446

Query  254  AGCGGAA---CC-G--GCTGTTGTGAAACCCGAACCCGAAAA---GGCTGTTGTTGTTGT  304
            ||| |||   || |  | ||||||| ||||| ||||||||||   ||| |||||||||||
Sbjct  447  AGCAGAACCTCCTGCTGTTGTTGTGGAACCCAAACCCGAAAAGGCGGCAGTTGTTGTTGT  506

Query  305  GTCGGCTGAGCCATCTTCCGCAGCGGTTCCTGAGGAGAGCGAGCCAACGAGACCTGCACG  364
             ||||| |||||||||||| | ||||||||||||| || ||||||| |||||||||||||
Sbjct  507  CTCGGCCGAGCCATCTTCCTCGGCGGTTCCTGAGGCGAACGAGCCATCGAGACCTGCACG  566

Query  365  ACCTACTAACCGATGTTTGTGTTGTAACAAGAAGGTTGGGATCATGGGGTTTAAGTGCAA  424
            |   || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  567  A---ACCAACCGGTGTTTGTGTTGTAACAAGAAGGTTGGGATCATGGGGTTTAAGTGCAA  623

Query  425  ATGCGGGAGCACTTTCTGCGGCGATCATCGGTACCCGGAGACTCATGATTGCAGCTTTGA  484
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  624  ATGCGGGAGCACTTTCTGCGGCGAACATCGGTACCCGGAGACTCATGATTGCAGCTTTGA  683

Query  485  TTTCAAAGAAACTGGGCGCGGAGAGATTGCCAAAGCCAATCCTGTGGTTAAGGCTGATAA  544
            ||||||||||  ||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct  684  TTTCAAAGAAGTTGGACGTGGAGAGATTGCCAAAGCTAATCCTGTGGTTAAGGCTGATAA  743

Query  545  ACTTCAAAGGTTCTGAAATATTGAAGTTTTT  575
            | ||||||||||||||||||| |||||||||
Sbjct  744  AATTCAAAGGTTCTGAAATATGGAAGTTTTT  774



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27879951585


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5