BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945842
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22770.1 | Symbols: | AT hook motif DNA-binding family prot... 1557 0.0
> AT4G22770.1 | Symbols: | AT hook motif DNA-binding family protein
| chr4:11963628-11965684 REVERSE LENGTH=1501
Length=1501
Score = 1557 bits (843), Expect = 0.0
Identities = 975/1038 (94%), Gaps = 12/1038 (1%)
Strand=Plus/Plus
Query 8 AATCGCTAA-AGATATGGAGTCTACCGGCGAAGTTGTTAAAACAACCACCGGGAGCGACG 66
||||| ||| || ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 233 AATCG-TAATAGGTATGGAGACTACCGGAGAAGTTGTTAAAACAACCACCGGGAGCGACG 291
Query 67 GTGGCGTTACCGTGGTGAGATCCAACGCGCCGTCAGACTTCCACATGGCTCCGAGGTCAG 126
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GAGGCGTTACGGTGGTGAGATCCAACGCGCCGTCAGACTTCCACATGGCTCCGAGGTCAG 351
Query 127 AAACTTCAAACCCACCTCCCACCTCCGTCGCTCCTCCTCCTCCTCCACCGTCGCAAAACT 186
||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 352 AAACTTCAAACACACCTCCCAACTCCGTCGCTCCTCCTCCTCCTCCACCGCCGCAAAACT 411
Query 187 CCTTTACTCCGCCGGCGGCGATGGATGGTTTCTCAAGCGGACCGATAAAGAAGAGGCGTG 246
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 412 CCTTTACTCCGTCGGCGGCTATGGATGGTTTCTCAAGCGGACCGATAAAGAAGAGACGTG 471
Query 247 GACGCCCTAGGAAGTACAGACACGACGGAGCAGCGGTGACGCTTTCACCGAATCCGATAT 306
| ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 472 GGCGCCCTAGGAAGTACGGACACGACGGAGCAGCGGTGACGCTATCTCCGAATCCGATAT 531
Query 307 CAACAGCCGCACCAACGACTTCTCACGTCATCGATTTCTCGACGACAGCGGAGAAACGTG 366
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 532 CATCAGCCGCACCAACGACTTCTCACGTCATCGATTTCTCGACGACATCGGAGAAACGTG 591
Query 367 GCAAAATGAAACCAG------CAACTCCAAGCTCCTTCATCAGACCAAAGTACCAGGTCG 420
||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 592 GCAAAATGAAACCAGCAACTCCAACTCCAAGCTCATTCATCAGGCCAAAGTACCAGGTCG 651
Query 421 AGAATTTAGGTGAATGGGCTCCTTCCTCTGCTGCCGCTAATTTCACGCCGCATATTATTA 480
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 652 AGAATTTAGGTGAATGGTCTCCTTCCTCTGCCGCCGCTAATTTCACGCCGCATATTATTA 711
Query 481 CGGTCAACGCAGGCGAGGACGTAACGAAGAGGATAATATCATTTTCTCAACAAGGGTCTC 540
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 712 CGGTGAATGCAGGCGAGGACGTTACGAAGAGGATAATATCATTTTCTCAACAAGGGTCTC 771
Query 541 TAGCTATTTGCGTTTTATGCGCAAACGGTGTCGTTTCTAGTGTTACACTTCGTCAGCCTC 600
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 772 TAGCTATTTGCGTTTTATGCGCAAACGGTGTCGTTTCGAGCGTTACACTTCGTCAGCCTG 831
Query 601 ATTCATCTGGTGGTACATTGACCTATGAGGGTCGGTTTGAGATATTGTCACTGTCCGGAA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 832 ATTCATCTGGTGGTACATTGACCTATGAGGGTCGGTTTGAGATATTGTCACTATCTGGAA 891
Query 661 CATTCATGCCTAGTGACTCGGATGGAACACGAAGCAGAACAGGCGGGATGAGCGTGTCA- 719
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 892 CATTCATGCCTAGTGACTCAGACGGGACACGAAGCAGAACAGGCGGGATGAGCGTGTCGC 951
Query 720 TTGGCTAGCCCTGATGGACGTGTAGTAGGTGGTGGTGTTGCTGGCTTGCTGGTTGCAGCT 779
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTG-CTAGCCCTGATGGACGTGTAGTAGGTGGTGGTGTTGCTGGCTTGCTGGTTGCAGCC 1010
Query 780 ACTCCTATTCAGGTGGTTGTAGGAAGTTTCTTAGCTGGAACAAACCAACAAGATCAGAGA 839
||||||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||| |
Sbjct 1011 ACTCCTATTCAAGTGGTTGTAGGAACTTTCTTAGGTGGAACAAACCAGCAAGAACAGACA 1070
Query 840 CCGAAGCAGCAGAACCACAATTTCATTTCTTCTCCATTAATGCCAACTTCTTCGAATGTA 899
||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1071 CCGAAGCCGCATAACCACAACTTCATGTCTTCTCCATTAATGCCAACTTCTTCGAATGTA 1130
Query 900 GCTGATCATCGAAACATCCGTCCCATGCCATCTACTCTCCCGATCAGTACATGGACACCG 959
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1131 GCTGATCATCGAACCATCCGTCCCATGACATCTAGTCTCCCGATCAGTACATGGACACCG 1190
Query 960 TCTTTTCCTTCTGATCCAAGACACAAGC-TCTCTCATGACTTTAACATCACTTTGACGTG 1018
||||||||||||||| || ||||||||| | |||||||||||||| ||||||||||||||
Sbjct 1191 TCTTTTCCTTCTGATTCACGACACAAGCAT-TCTCATGACTTTAATATCACTTTGACGTG 1249
Query 1019 ATTTCTTCCTTAAAGAAC 1036
||||||||||| ||||||
Sbjct 1250 ATTTCTTCCTTGAAGAAC 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5