BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945849

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22745.1 | Symbols: MBD1 | methyl-CPG-binding domain 1 | chr...   680    0.0  


> AT4G22745.1 | Symbols: MBD1 | methyl-CPG-binding domain 1 | chr4:11947313-11948757 
REVERSE LENGTH=844
Length=844

 Score =  680 bits (368),  Expect = 0.0
 Identities = 463/509 (91%), Gaps = 6/509 (1%)
 Strand=Plus/Plus

Query  67   AGAAAAAGGCCGGTACTCCAGGGAGGTCGATCGATGTCTTTGCTGTACAGTGTGAAAAAT  126
            ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || |
Sbjct  246  AGAAAAAAGCCGGTACTCCAGGGAGGTCGATAGATGTCTTTGCTGTGCAGTGTGAGAAGT  305

Query  127  GCCTGAAGTGGAGGCAGATTGATACTCAAGATGAATACGAGGAGATCAGAAGTAGAATAC  186
            || ||||||||||| ||||||||||||||||||| || || || |||||||||||| |||
Sbjct  306  GCATGAAGTGGAGGAAGATTGATACTCAAGATGAGTATGAAGATATCAGAAGTAGAGTAC  365

Query  187  AAGAGGACCCGTATGTGTGCGAGAAGAAAGAAGGTATATCCTGTGAAGATGCTGGAGACT  246
            |||||||||||| | | ||| ||| |||||||||| | ||||||||||||| |||||| |
Sbjct  366  AAGAGGACCCGTTTTTTTGCAAGACGAAAGAAGGTGTGTCCTGTGAAGATGTTGGAGA-T  424

Query  247  -TAAACTATGATTCCTCCAGAACATGGGTCATCGACAAGCCTGGCTTGCCAAAGACACCA  305
             ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct  425  CTAAACTATGATTCCTCCAGAACATGGGTCATCGACAAGCCTGGCTTGCCGAGGACACCA  484

Query  306  AGAGGGTTCAAGAGAAGCTTAATTCTGAGAAAGGACTACTCGAAAATGGATGCGTACTAC  365
            ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  485  AGAGGGTTCAAAAGGAGCTTAATTCTGAGAAAGGATTACTCGAAAATGGATGCGTACTAC  544

Query  366  ATAACTCCCACTGGGAAGAAGCTCAAGTCTCGCAATGAAATCGCTGCCTTCATCGATGCC  425
            |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  545  ATAACTCCTACTGGGAAGAAGCTCAAGTCTCGTAATGAAATCGCAGCCTTCATCGATGCC  604

Query  426  AATCAGGATTACAAGTATGCACTGCTTGGCGACTTCAATTTCACAGTCCCAAAGGTGATG  485
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  605  AATCAGGATTACAAGTATGCACTGCTTGGAGATTTCAATTTCACAGTCCCAAAGGTGATG  664

Query  486  GAAGAGACTGTGCCTAATGGTATAATATCTGACAGGACCCCCAAGACATCCAAGGGAAGT  545
            |||||||| || |||| ||| ||| |||||||||||||||||||| |||| |||| ||||
Sbjct  665  GAAGAGACGGTTCCTAGTGGGATATTATCTGACAGGACCCCCAAGCCATC-AAGGAAAGT  723

Query  546  AAC--T-GATTGAGCTACAAAGCGGTTCC  571
             ||  | |||||||||||| |||| ||||
Sbjct  724  TACAATTGATTGAGCTACATAGCGCTTCC  752



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27478078409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5