BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945850
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22740.1 | Symbols: | glycine-rich protein | chr4:11943849-... 1515 0.0
> AT4G22740.1 | Symbols: | glycine-rich protein | chr4:11943849-11945897
REVERSE LENGTH=1318
Length=1318
Score = 1515 bits (820), Expect = 0.0
Identities = 1019/1114 (91%), Gaps = 18/1114 (2%)
Strand=Plus/Plus
Query 10 TTTATCA-GGAAGATGCAAGGA---ggtggtagagatccttttggtggtggttttggtgg 65
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 34 TTTATCAGGGAAGATGCAAGGAGGTGGTGGTAGAGATCCTTTTGGTGGTGGTTTTGGGGG 93
Query 66 tccttttggtggttttggaggcggctcttttggtcgttttgg-agtcggttcctttggtg 124
||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||
Sbjct 94 TCCTTTTGGTGGTTTTGGAGGTGGCTCTTTTGGTGGTTTTGGAAG-AGGTTCCTTTGGTG 152
Query 125 gttttggtggCCCTAATCGTCCTCCAAATTTGATGGCTAATTTTTTCGGAGGAAGAGATC 184
| ||||||||||||||| ||||||| | | | ||| ||||||||||||||||||||||||
Sbjct 153 GATTTGGTGGCCCTAATGGTCCTCCGAGTCTCATGTCTAATTTTTTCGGAGGAAGAGATC 212
Query 185 CGTTTGATGACCCTTTTTTCACTCAGCCTTTTGGTGGTGGCATGTTTCAGTCCAACTTCT 244
| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 213 CATTTGACGACCCTTTCTTCACTCAGCCTTTTGGTGGTGGCATGTTTCAATCCAACTTCT 272
Query 245 TTGGTCCTAGCATGAATCCTTTTGCGGAAATGCGTCGTCTTCCCCCGGGTTTTATTGAGA 304
||||||| ||||||||||||||||| ||||||| |||||| || | ||||||||||||||
Sbjct 273 TTGGTCCCAGCATGAATCCTTTTGCAGAAATGCATCGTCTGCCACAGGGTTTTATTGAGA 332
Query 305 ATAATCAGCCACCAGGACCGAGTAGATCACGCGGACCGGTTATtgaagagattgaatcag 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 333 ATAATCAGCCTCCAGGACCGAGTAGATCACGCGGACCGGTTATTGAAGAGATTGATTCAG 392
Query 365 atgatgagaaagaaggagaaggtgataaagagaagaaaggaagaCTAGGGAAACATGGCA 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 393 ATGATGAGAAAGAAGGAGAAGGTGATAAAGAGAAGAAAGGAAGTCTAGGGAAACATGGCA 452
Query 425 GGTCAAGCAGTGAGGTTGAAGCTGAAGATTTATTTAACG-GAAGGAAATCGTTTGTTTCT 483
||||||||||||||| |||| ||||||| | | | | | | || | | | |
Sbjct 453 GGTCAAGCAGTGAGGCTGAAACTGAAGA-TGCTAGAGTGCG-A-GAGA--G-AAGAAAC- 505
Query 484 TTGG-AACTG-ATTGTGTTTTATGTAAATGCAGAGAGAAGGAACCGACAAATGCAAAACA 541
|| || || | | | |||||||||||||||||||||||||| ||||||| ||||
Sbjct 506 -CGGCAAATGCAAAG-CATGAATGTAAATGCAGAGAGAAGGAACCGAGAAATGCAGAACA 563
Query 542 TGAATGTAAATGCAGAGAGAAGGAACCCACAAATGCAGAACATGAATGTGAATGCCATGG 601
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 564 TGAATGTGAATGCAGAGAGAAGGAACCCACAAATGCAGAACATGAATGTGAATGCTATGG 623
Query 602 TGAACAATGGACAGTGGCAACCTCAAACTGGTAGTTATAGTTTTCAGAGCTCGACTGTTA 661
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 624 TGAACAATGGACAGTGGCAACCTCAAACCGGTAGTTATAGTTTTCAGAGCTCGACTGTTA 683
Query 662 CATACGGTGGTCAGAACGGCAACTACTATACTTCATCGAAGACCAGAAGGACAGGAAGTG 721
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 684 CATACGGTGGTCAGAACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTG 743
Query 722 ATGGGTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAGGCAGCGCATA 781
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 744 ATGGGTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATA 803
Query 782 GGATTTCAAGGGGCCTTCATAACAAGGGCCACACGGTTGCGCGTAATCTTAACTCAGATG 841
||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 804 TGATTTCAAGAGGCCTTCATAACAAGGGCCACACAGTTGCGCGTAAACTTAACTCAGATG 863
Query 842 GCCGTGTTGATACAACACAGACCTTGCACAATTTAAATGAAGATGAATTGGCCACCTTTG 901
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 864 GCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGATGAATTGGCTGGTTTTG 923
Query 902 AACAGTCTTGGAGTGGAAATGCTAGAAGGCAGATGCAATTACCCGGTCGGTCTGGTTCAT 961
||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 924 AACAGTCTTGGAGTGGAAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCAT 983
Query 962 TTGGAAGTGGTCTTGTAAACAGAGAGCAACCAATGTTGCTTCCCTCGACTGATCCAAGTC 1021
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 984 TTGGAAGTGGTCTTGTGAACAGAGAGCAACCAATGTTACTTCCCTCGACTGATCCAAGTC 1043
Query 1022 CTTCTCATGCCCGAGCAGAGTCATCCCGAAGACCGAAAGCTGCAATGAATGTAAGAGGAC 1081
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CTTCTCATGCACGAGCAGAATCATCCCGAAGACCGAAAGCTGCAATGAATGTAAGAGGAC 1103
Query 1082 ATGGTAGAAACTAATCTCTGACGACATGTATGGT 1115
|||||| ||||||||||| | | | |||||||||
Sbjct 1104 ATGGTACAAACTAATCTCCGCCTATATGTATGGT 1137
Score = 128 bits (69), Expect = 1e-28
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 510 TGC-AGAGAGAAGGAACCGACAAATGCAAAACATGAATGTAAATGCAGAGAGAAGGAACC 568
||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 489 TGCGAGAGAGAAGAAACCGGCAAATGCAAAGCATGAATGTAAATGCAGAGAGAAGGAACC 548
Query 569 CACAAATGCAGAACATGAATGTGAATGC 596
| |||||||||||||||||||||||||
Sbjct 549 GAGAAATGCAGAACATGAATGTGAATGC 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54668393505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5