BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945854
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22720.1 | Symbols: | Actin-like ATPase superfamily protein... 1731 0.0
> AT4G22720.1 | Symbols: | Actin-like ATPase superfamily protein
| chr4:11936942-11938966 FORWARD LENGTH=1539
Length=1539
Score = 1731 bits (937), Expect = 0.0
Identities = 1049/1105 (95%), Gaps = 0/1105 (0%)
Strand=Plus/Plus
Query 1 GTTTCTGTTTTTAAATCAAAGAAATGAAGAAGAAGATGATAGCCATTGGTTTCGAAGGTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 206 GTTTCTGTTTTTAAATCAAAGAAATGAAGAAGAAGATGATAGCCATTGGTTTCGAAGGAT 265
Query 61 CAGCTAACAAGATTGGGGTTGGAATTGTTACATTAGACGGTACAATCTTAGCGAATCCTC 120
|||||||||||||||| ||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 266 CAGCTAACAAGATTGGAGTTGGAATTGTGACTTTAGACGGTACTATCTTAGCAAATCCTC 325
Query 121 GGCATACTTATATAACACCGCCTGGTCACGGTTTTCTTCCTAGAGAGACTGCACATCACC 180
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 326 GGCATACGTATATAACACCACCTGGTCATGGTTTTCTTCCTAGAGAGACTGCACATCACC 385
Query 181 ATCTTGACCATGTTCTTCCTTTAGTCAAATCAGCTTTAGAGACTTCTGAAGTTACTCCTG 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 386 ATCTTGACCATGTTCTTCCTTTAGTCAAATCAGCTTTAGAGACTTCTCAAGTTACTCCTG 445
Query 241 AAGAAATCGACTGCATTTGTTACACGAAAGGTCCTGGGATGGGAGCGCCGTTGCAGGTTT 300
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 446 AAGAAATCGACTGTATTTGTTATACGAAAGGTCCCGGGATGGGAGCGCCGTTGCAGGTTT 505
Query 301 CAGCTATTGTTGTTAGAGTATTGTCGCAGCTTTGGAAAAAGCCGATTGTTGCTGTGAATC 360
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 506 CAGCCATTGTTGTTAGAGTATTGTCACAGCTTTGGAAAAAGCCAATTGTTGCTGTGAATC 565
Query 361 ATTGTGTGGCTCACATTGAGATGGGGAGAGTAGTTACTGGAGCTGATGATCCTGTTGTAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 566 ATTGTGTGGCTCACATTGAGATGGGGAGAGTAGTTACTGGAGCTGATGATCCTGTTGTGT 625
Query 421 TGTATGTGAGTGGTGGGAATACTCAGGTGATTGCTTATAGTGAAGGTAGATACCGGATTT 480
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 626 TGTATGTGAGTGGTGGTAACACTCAGGTGATTGCTTATAGTGAAGGTAGGTACCGGATTT 685
Query 481 TCGGTGAGACTATTGATATTGCTGTTGGTAATTGTTTGGATCGGTTTGCTAGAGTCTTGA 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTGGTGAGACTATTGATATTGCTGTTGGTAATTGTTTGGATCGGTTTGCTAGAGTCTTGA 745
Query 541 AGCTTTCTAATGATCCAAGCCCTGGTTATAACATCGAACAGCTTGCCAAGAAAGGAGAAA 600
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 746 AGCTTTCTAATGATCCAAGCCCTGGTTATAACATTGAACAGCTTGCTAAGAAAGGAGAAA 805
Query 601 ACTTTATTGATCTTCCGTATGCTGTTAAAGGTATGGATGTATCTTTCAGTGGAATCTTGA 660
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 806 ACTTTATTGATCTTCCGTATGCTGTTAAAGGTATGGATGTATCGTTCAGCGGAATCTTGA 865
Query 661 GTTATATCGAAACTACCGCGGAGGAGAAGCTCAAGAATAACGAGTGTACACCAGCAGACT 720
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 866 GTTATATCGAAACTACTGCAGAGGAGAAGCTCAAGAATAACGAGTGTACACCAGCAGACT 925
Query 721 TGTGTTATTCCCTTCAAGAGACGGTGTTTGCAATGTTGGTTGAGATCACGGAAAGAGCGA 780
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 926 TGTGTTATTCCCTTCAAGAGACGGTGTTTGCGATGTTGGTTGAGATCACAGAAAGAGCGA 985
Query 781 TGGCACATTGTGACAAGAAAGACGTTTTGATAGTTGGGGGTGTCGGTTGTAATGAGCGTT 840
|||| |||||||||||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct 986 TGGCGCATTGTGACAAGAAAGACGTTTTGATAGTTGGCGGTGTTGGGTGTAACGAGCGTT 1045
Query 841 TGCAGGACATGATGAGGACTATGTGCTCTGAACGTGATGGTAAGTTGTTTGCGACGGATG 900
||||||| |||||||||||||||||||| ||||||||||||||| ||||||| || ||||
Sbjct 1046 TGCAGGAAATGATGAGGACTATGTGCTCAGAACGTGATGGTAAGCTGTTTGCAACAGATG 1105
Query 901 ACCGTTACTGCATCGATAATGGAGCGATGATCGCCTACACAGGTCTACTCGCATTTGTTA 960
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 1106 ACCGTTACTGCATCGATAATGGAGCTATGATCGCTTACACAGGTCTACTCGCGTTTGTTA 1165
Query 961 ATGGTATTGAAACGCCGATCGAAGACTCTACCTTTACACAGCGATTTCGAACAGACGAGG 1020
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1166 ATGGTATTGAAACACCGATCGAAGACTCTACCTTTACACAACGATTTCGCACAGACGAGG 1225
Query 1021 TTCATGCGGTATGGCGAGAGAAAGAAGCTTTGGTACTTGGGGATAAGAACGTTGCTGTTA 1080
|||||||||| |||||||||||||||||| | |||||||||||||||| ||||| | |
Sbjct 1226 TTCATGCGGTGTGGCGAGAGAAAGAAGCTGTACTACTTGGGGATAAGAAAGTTGCAGCGA 1285
Query 1081 ATTGATTATGTGCCCATTTTTGTTC 1105
||||| | ||| |||||||||||||
Sbjct 1286 ATTGAGTCTGTCCCCATTTTTGTTC 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5