BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945855
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22700.1 | Symbols: LBD32 | LOB domain-containing protein 32... 617 3e-176
> AT4G22700.1 | Symbols: LBD32 | LOB domain-containing protein
32 | chr4:11933297-11933886 FORWARD LENGTH=590
Length=590
Score = 617 bits (334), Expect = 3e-176
Identities = 511/595 (86%), Gaps = 17/595 (3%)
Strand=Plus/Plus
Query 17 AAGAATGGCTTCCAAACGTTGTGCTGTCTGCAAGATCTTGAAAGAAACTTGTGCTCCAGG 76
||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAAT 60
Query 77 GTGCATCTCCGCACCACATTTTCCATCGGACGATACGAGATTCGATGATGTTCA-TCAAG 135
|||||| | ||||||||||||||||| ||||| | || ||| | | | || | || ||
Sbjct 61 GTGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATT-ATTC-AG 118
Query 136 -TTTTTGGAGCCGTGAACGTCCGCAACATCCTCAATAATCTTGAATCCCCAGAACAGCGT 194
|||||||||||||||| || |||| ||||| |||||||||||| |||||||| ||
Sbjct 119 ATTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAATTTCCAGAACAACGA 178
Query 195 GCGATTGCTGCCAACTGTTTGCGTTATGCGGCTGAAGCTCGTAGACGTGACCCTATTTCT 254
| |||||||||||||||||| |||||||| ||||| ||||||| |||| | |||||||||
Sbjct 179 GAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTCT 238
Query 255 GGTTGTCATGGCATGA-TCTTACACTACAAGAATATTCTCAATAATGTTGAACAAGATAT 313
|||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 239 GGTTGTCATGACATGATTC-TACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297
Query 314 TAAATCTGCAATGAATGAGCTCGAAACCTATGTGGGACACGATCAAGTGCCAAAATTTTA 373
| |||| || |||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 298 TGAATCCGCGGTGAATGAGCTTGGAACCTATGTGGGACACGATCAAGTACCAAAATTTTA 357
Query 374 TGATCTTCCAATGCCAGATGATTTCCTCATTACACCAGGCTCTTCAGATTCCTTTATTGA 433
|||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||
Sbjct 358 TGATCTTCCAATGCCAGATGATTTCCTCATGACACCAGTCTCTTTAGATTCTTTTATTGC 417
Query 434 AAAAATAAAGAGTCTAAACGATGTTCAAAAGAATCAACTTATGCAACTCCAAACAGCTGC 493
|||||| |||||| ||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 418 AAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTGCTGC 477
Query 494 TGATG-TGCA--AATGATAATGAGTAACATATTTTGGAAGA-GAGAAGATCAAAAGATGG 549
|||| |||| ||||||||||| || ||||||| |||||| | |||||| |||| ||
Sbjct 478 TGATAATGCACCAATGATAATGAATAGCATATTTGGGAAGATG-GAAGATAAAAACCTGA 536
Query 550 ATGATGGTCATGGTCATGGAGCTGATGGCGCATCAACATCTGCTAGTCAGTGATA 604
| ||||| ||| | | ||||||||| ||||||||||||||| || |||||||
Sbjct 537 AAGATGGGCAT----A-G-AGCTGATGGTGCATCAACATCTGCTGGTAAGTGATA 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5