BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945865
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22600.1 | Symbols: | unknown protein; Has 26 Blast hits to... 1227 0.0
> AT4G22600.1 | Symbols: | unknown protein; Has 26 Blast hits
to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:11900211-11901032 REVERSE
LENGTH=822
Length=822
Score = 1227 bits (664), Expect = 0.0
Identities = 773/825 (94%), Gaps = 9/825 (1%)
Strand=Plus/Plus
Query 21 ATGCCTTTCTCTTTCTTCTCCCGCAAGAAACCTTCTCGTCGCTTCAATGATTTCTACGAC 80
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1 ATGCCTTTCTCTTTCTTCTCCCGCAAGAAACCATCTCGTCGATTCAATGATTTCTACGAA 60
Query 81 GACTGGTCCAAAACTCTAACCGAAAACTGCCTCCCTCTCCTCCGTCAATCACTTTCCTCC 140
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACTGGTCAAAAACCCTAACCGAAAACTGCCTCCCTCTCCTCCGTCAATCACTTTCCTCC 120
Query 141 GCCGCTTCTGCTTCCGTCCTCTCCTCCAACGTAGACCTCGTCCTTCGTCACCTAGTCTTA 200
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GCCGCTTCCGCTTCCGTCCTCTCCTCCAACGTAGACCTCGTCCTCCGTCACCTAGTCTTA 180
Query 201 TACTACGAAACCCTAGATCTCGCCGCCGATCCA-AACACCATCCCGTACCTTCTCTTCCC 259
|||||||||||||||||||| || |||||| || |||||||| || ||||||||||||||
Sbjct 181 TACTACGAAACCCTAGATCTTGCTGCCGAT-CACAACACCATTCCTTACCTTCTCTTCCC 239
Query 260 TTCATGGCGCAACTCTCTCGAGACTCCGTTTCTTTTCCTCGGCGATATCCATCCTTATCT 319
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 TTCATGGCGTAACTCTCTCGAGACTCCGTTTCTTTTCCTCGGCGATATCCATCCTTACCT 299
Query 320 CCTCACTAATCTCCTCCGTTCTTTCATCGATCGTGAGAATCAAGATT-C--CGACGAAGA 376
|||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct 300 CCTCACCAATCTCCTCCGTTCTTTCATCGACCGTGAGAATCAAGATTCCGACGACGAAGA 359
Query 377 CGACGAGACTTCTCTTGATCTTATGAATCAACCGTTAAAGATGACGACGGCGTGGAAAGA 436
||| || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 360 CGAGGAAACTTCTCTTGATCTTGTGAATCAACCGTTAAAGATGACGATGGCGTGGAAAGA 419
Query 437 TCCTTCTGATGAGTTGGTTAAAAGAATCGATCAGATTGAGTGTACGATGAGACTTATGGT 496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TCCTTCTGATGAGTTGGTTAAAAGAATCGATCAGATTGAGTGTACAATGAGACTTATGGT 479
Query 497 TCCTGGTTTAATGGATCGTATGAGGAAAGCACAGAGAAGTTTCGTGGCTCGAGTTTCTGA 556
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 TCCTGGTTTAATGGATCGTATGAGGAAAACACAGAGAAGTTTCGTGGCTCGAGTTTCTGA 539
Query 557 GAATTGGGTCTTGTCGTATCAA-TTGGGGAAGAAGAAGAAGCTCCCCGCGACGGCAGTGG 615
|| |||||||| |||||||||| ||||| |||||||||||||| | ||||||| | |
Sbjct 540 GAGTTGGGTCTCGTCGTATCAAGTTGGG-AAGAAGAAGAAGCTTACTGCGACGGTTGCGA 598
Query 616 TAGCTTCAACGTCGGTGGATGAAGCGGCCAAGGAA-GAGATGGAAGAGCTTGTGAGTATT 674
||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||
Sbjct 599 CGGCTTCAACGTCGGTGGATGAAGCAGCAAAG-ATTGAGATGGAAGAGCTTGTGAGTATT 657
Query 675 TTTGTTGATGCCAATCGTTTGAGGAAGAGTGTGATCATGGACATTGTTGGAGCTACGAGT 734
|| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 658 TTCGTTGATGCGAATCGTTTGAGGAAGAGTGTGATTATGGACATTGTTGGAGCTACAAGT 717
Query 735 GAGCATCAAGCGGCTCTGTTTCTTGAAGGTTTATGTCAGTTTCTTGCTGGGTTTAAAGAT 794
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GAGCATCAAGCGGCTCTGTTTCTTGAGGGTTTATGTCAGTTTCTTGCTGGGTTTAAAGAT 777
Query 795 CAGGTTCTTCTTCAAGATTTCGAGATTCTTGCTTTGCCCAATTAA 839
||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 778 CAGATTCTTCTTCAAGATTTTGAGATTCTTTCTTTGCCCAATTAA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5