BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945878
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22517.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 364 2e-100
AT4G22513.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 337 4e-92
AT4G22510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 230 8e-60
> AT4G22517.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:11856743-11857313
FORWARD LENGTH=571
Length=571
Score = 364 bits (197), Expect = 2e-100
Identities = 241/262 (92%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 50 GTCTGACTTGGGGATTTGCGTCAACGTACTTGGTCTCATCAACCTCACCACCAGCAACGT 109
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 169 GTCTGACTTGGGGATTTGCGTCAACGTACTTGGTCTCATCTCCCTCACCACCAGCAACGT 228
Query 110 GGCCCAATGTTGTTCTATTTTATCTGGTCTTAATG---CTCCTCTTGTGTCTGTATGTGC 166
||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 229 GGCCCGATGTTGTTCTATCTTAGCTGGTCTTAATAATACTCCTCTTGTGTCTGTATGTGC 288
Query 167 ATGCGAGGCCCTAAGACTCAATATACTTAACCTTCTCGGCATCACCATCAACCTCAATTT 226
||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 289 ATGCGAGGCTGTAAGACTCAATATTCTTAACCTTCTCGGCATCACCGTCAACCTCAATTT 348
Query 227 GAGGCTTAATGGGCTTCTTGGTCTCTGCCGTTTGCCGATACAACCTGGTTACAACTGCCT 286
||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||
Sbjct 349 GAGGCTTAATGGGCTCCTTGGTCTCTGTCGTTTGCCGGTACAACCTGGTTTCAACTGCCT 408
Query 287 TGCATAAGTAAACAACATACAG 308
| |||||||||||| || |||
Sbjct 409 TTTATAAGTAAACAATATGCAG 430
> AT4G22513.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:11854809-11855366
FORWARD LENGTH=558
Length=558
Score = 337 bits (182), Expect = 4e-92
Identities = 238/264 (90%), Gaps = 7/264 (3%)
Strand=Plus/Plus
Query 50 GTCTGACTTGGGGATTTGCGTCAACGTACTTGGTCTCATCAACC-TCACCACCAGCAACG 108
|||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 161 GTCTGAATTGGGGATTTGCGTCAACGTACTTGGTCTCATCT-CCATAACCACCAGCAACG 219
Query 109 TGGCCCAATGTTGTTCTATTTTATCTGGTCTTAAT---GCTCCTCTTGTGTCTGTATGTG 165
|||||||||||||||||| ||| ||||||||||| | | ||||||||||||||||||
Sbjct 220 CGGCCCAATGTTGTTCTATCTTAGCTGGTCTTAATAATGTTTCTCTTGTGTCTGTATGTG 279
Query 166 CATGCGAGGCCCTAAGACTCAATATACTTAACCTTCTCGGCATCACCATCAACCTCAATT 225
||||||||||| ||||||||||||| ||||| |||||||| |||||| ||||||||||||
Sbjct 280 CATGCGAGGCCGTAAGACTCAATATTCTTAATCTTCTCGGTATCACCGTCAACCTCAATT 339
Query 226 TGAGGCTTAATGGGCTTCTTGGTCTCTGCCGTTTGCCGATACAACCTGG-TTACAACTGC 284
|||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||||||
Sbjct 340 TGAGGCTTAATGGGCTCCTTGGTCTCTGTCGTTTGCCGGTACAACCTGGCTT-CAACTGC 398
Query 285 CTTGCATAAGTAAACAACATACAG 308
||| ||||||||||||||| |||
Sbjct 399 CTTTTATAAGTAAACAACATGCAG 422
Score = 93.5 bits (50), Expect = 1e-18
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1 TTATTTAGCATTTTCACAATATGGCTTCAAAGAACATGACAACAATCATG 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 TTATTTAGCATTTTCACAATATGGCTTCAAAGAACATGACAACAATCATG 89
> AT4G22510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, leaf;
Has 2 Blast hits to 2 proteins in 1 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11855048-11857072
REVERSE LENGTH=378
Length=378
Score = 230 bits (124), Expect = 8e-60
Identities = 150/162 (93%), Gaps = 3/162 (2%)
Strand=Plus/Minus
Query 50 GTCTGACTTGGGGATTTGCGTCAACGTACTTGGTCTCATCAACCTCACCACCAGCAACGT 109
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 162 GTCTGACTTGGGGATTTGCGTCAACGTACTTGGTCTCATCTCCCTCACCACCAGCAACGT 103
Query 110 GGCCCAATGTTGTTCTATTTTATCTGGTCTTAATG---CTCCTCTTGTGTCTGTATGTGC 166
||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 102 GGCCCGATGTTGTTCTATCTTAGCTGGTCTTAATAATACTCCTCTTGTGTCTGTATGTGC 43
Query 167 ATGCGAGGCCCTAAGACTCAATATACTTAACCTTCTCGGCAT 208
||||||||| ||||||||||||| |||||||||||||||||
Sbjct 42 ATGCGAGGCTGTAAGACTCAATATTCTTAACCTTCTCGGCAT 1
Score = 207 bits (112), Expect = 4e-53
Identities = 147/163 (90%), Gaps = 5/163 (3%)
Strand=Plus/Minus
Query 129 TTATCTGGTC-T--TAATGCTCCTCTTGTGTCTGTATGTGCATGCGAGGCCCTAAGACTC 185
||| |||||| | ||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 378 TTAGCTGGTCTTAATAATGTTTCTCTTGTGTCTGTATGTGCATGCGAGGCCGTAAGACTC 319
Query 186 AATATACTTAACCTTCTCGGCATCACCATCAACCTCAATTTGAGGCTTAATGGGCTTCTT 245
||||| ||||| |||||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct 318 AATATTCTTAATCTTCTCGGTATCACCGTCAACCTCAATTTGAGGCTTAATGGGCTCCTT 259
Query 246 GGTCTCTGCCGTTTGCCGATACAACCTGG-TTACAACTGCCTT 287
|||||||| ||||||||| |||||||||| || ||||||||||
Sbjct 258 GGTCTCTGTCGTTTGCCGGTACAACCTGGCTT-CAACTGCCTT 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14527379461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5