BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945879 Length=539 Score E Sequences producing significant alignments: (Bits) Value AT4G22505.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 392 2e-108 > AT4G22505.1 | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:11851228-11853018 REVERSE LENGTH=1791 Length=1791 Score = 392 bits (212), Expect = 2e-108 Identities = 268/295 (91%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 244 AGGACTCCACCAATGCCTCCCCCGCGTGGAAGATGCCCCATTAATGGTCTCCCACTACAA 303 |||||||||||| |||||||||| |||| |||||||| | |||||| ||||||||||| Sbjct 1384 AGGACTCCACCACCGCCTCCCCCGAGTGGTAGATGCCCTAGGAATGGTATCCCACTACAA 1443 Query 304 ATATGTAGCACTATCCTAAGTATTTTCGATGGTTTCCTAGGATTTGGAAGGGCGCAGCCA 363 ||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||| ||| Sbjct 1444 ATATGTAGCACTATCCTAAATATGTTCGATGGTTTCCTAGGATTAGGAACGGCGCAACCA 1503 Query 364 TGTTGTTCTCTCATTCGAAATCTTTCTGATGCTGACGCACTTGCTTGCCTTTGTGAATCA 423 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 1504 TGTTGTTCTCTCATTCGTGGTCTTTCTGATGCTGACGCACTTGCCTGCCTTTGTGAATCA 1563 Query 424 GTGAGAGCACCAAGTGGCAGTCTACCTCCTAATATCATCAA--TCTTTATAGGACTTGTG 481 ||||||||||||||| ||||||| |||| |||||||||||| ||||||| |||||||| Sbjct 1564 GTGAGAGCACCAAGTCGCAGTCTTCCTCGTAATATCATCAACCTCTTTAT--GACTTGTG 1621 Query 482 GTCGTAGCATTCCCCCAGGCTTCACTTGCCCATGACCATCACCTTTCCCCAGAAT 536 |||||||||||||||||||||||||||||||||||||| | |||||||||| ||| Sbjct 1622 GTCGTAGCATTCCCCCAGGCTTCACTTGCCCATGACCACCTCCTTTCCCCACAAT 1676 Score = 230 bits (124), Expect = 1e-59 Identities = 162/180 (90%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 2 ATATATTTAACCTTGGA-AAAATGAATCCAAAATGTTCAAAAACAACCCTAGCCCTCTTC 60 |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 43 ATATATATAACCTCGGACAAAATGAATCCAAAATGTTCAAAAACAACCCTAGCCCTCTTC 102 Query 61 TTTGCATTCACCATCCTCCTCATTGGCGACGCCGAAGCTAATAGCCGGCCCCGCCCTAGA 120 || |||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||| Sbjct 103 TTCGCATTCACCATCCTCCTCATTGGCCACGCTGAATCTAATAGCCGTCCCCGCCCTAGA 162 Query 121 CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCAACTACTCCTCCACGTACGCCA 180 |||||||||| |||||||||||||||||||||| || || |||| ||||| || ||| Sbjct 163 ACACCACCTCC---ACCACGAACCCCAAGAACTCCATCACCTCCTCCACCACGAACCCCA 219 Score = 84.2 bits (45), Expect = 1e-15 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 121 CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCAACTACTCCTCCACGTACGCCA 180 ||||||||||||||||||||||||||||||||||||||| || |||| ||||| || ||| Sbjct 226 CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCACCTCCTCCACCACGAACCCCA 285 Score = 78.7 bits (42), Expect = 5e-14 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 121 CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCAACTACTCCTCCA 171 ||||||||||||||||||||||||||||||||||||||| || |||| ||| Sbjct 259 CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCACCTCCTCCACCA 309 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25820351558 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5