BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945879

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22505.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   392    2e-108


> AT4G22505.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:11851228-11853018 
REVERSE LENGTH=1791
Length=1791

 Score =  392 bits (212),  Expect = 2e-108
 Identities = 268/295 (91%), Gaps = 4/295 (1%)
 Strand=Plus/Plus

Query  244   AGGACTCCACCAATGCCTCCCCCGCGTGGAAGATGCCCCATTAATGGTCTCCCACTACAA  303
             ||||||||||||  |||||||||| |||| |||||||| |  |||||| |||||||||||
Sbjct  1384  AGGACTCCACCACCGCCTCCCCCGAGTGGTAGATGCCCTAGGAATGGTATCCCACTACAA  1443

Query  304   ATATGTAGCACTATCCTAAGTATTTTCGATGGTTTCCTAGGATTTGGAAGGGCGCAGCCA  363
             ||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||| |||
Sbjct  1444  ATATGTAGCACTATCCTAAATATGTTCGATGGTTTCCTAGGATTAGGAACGGCGCAACCA  1503

Query  364   TGTTGTTCTCTCATTCGAAATCTTTCTGATGCTGACGCACTTGCTTGCCTTTGTGAATCA  423
             |||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||
Sbjct  1504  TGTTGTTCTCTCATTCGTGGTCTTTCTGATGCTGACGCACTTGCCTGCCTTTGTGAATCA  1563

Query  424   GTGAGAGCACCAAGTGGCAGTCTACCTCCTAATATCATCAA--TCTTTATAGGACTTGTG  481
             ||||||||||||||| ||||||| |||| ||||||||||||  |||||||  ||||||||
Sbjct  1564  GTGAGAGCACCAAGTCGCAGTCTTCCTCGTAATATCATCAACCTCTTTAT--GACTTGTG  1621

Query  482   GTCGTAGCATTCCCCCAGGCTTCACTTGCCCATGACCATCACCTTTCCCCAGAAT  536
             |||||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct  1622  GTCGTAGCATTCCCCCAGGCTTCACTTGCCCATGACCACCTCCTTTCCCCACAAT  1676


 Score =  230 bits (124),  Expect = 1e-59
 Identities = 162/180 (90%), Gaps = 4/180 (2%)
 Strand=Plus/Plus

Query  2    ATATATTTAACCTTGGA-AAAATGAATCCAAAATGTTCAAAAACAACCCTAGCCCTCTTC  60
            |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  43   ATATATATAACCTCGGACAAAATGAATCCAAAATGTTCAAAAACAACCCTAGCCCTCTTC  102

Query  61   TTTGCATTCACCATCCTCCTCATTGGCGACGCCGAAGCTAATAGCCGGCCCCGCCCTAGA  120
            || |||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||
Sbjct  103  TTCGCATTCACCATCCTCCTCATTGGCCACGCTGAATCTAATAGCCGTCCCCGCCCTAGA  162

Query  121  CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCAACTACTCCTCCACGTACGCCA  180
             ||||||||||   |||||||||||||||||||||| || || |||| ||||| || |||
Sbjct  163  ACACCACCTCC---ACCACGAACCCCAAGAACTCCATCACCTCCTCCACCACGAACCCCA  219


 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 55/60 (92%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  121  CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCAACTACTCCTCCACGTACGCCA  180
            ||||||||||||||||||||||||||||||||||||||| || |||| ||||| || |||
Sbjct  226  CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCACCTCCTCCACCACGAACCCCA  285


 Score = 78.7 bits (42),  Expect = 5e-14
 Identities = 48/51 (94%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  121  CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCAACTACTCCTCCA  171
            ||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct  259  CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCACCTCCTCCACCA  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25820351558


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5