BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945881

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22485.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   287    6e-77


> AT4G22485.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:11844506-11846476 
REVERSE LENGTH=1971
Length=1971

 Score =  287 bits (155),  Expect = 6e-77
 Identities = 334/413 (81%), Gaps = 42/413 (10%)
 Strand=Plus/Plus

Query  22   ATGGCCCCAAAGGGTTCAACAAAAACCTTAGCTCTCTTCCTTGCACTGATCAGCATTCTT  81
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1    ATGGCCCCAAAGGGTTCAACAAAAACCTTAGCTCTCTTCCTTACACTGATCAGCATTCTT  60

Query  82   CTCCTCGGCCAAACCCAAGCCCAAAACCGTCCCTATCTCCGCCCACCTCCCCCACGCTTT  141
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  61   CTCCTCGGCCAAACCCAAGCCCAAAACCGTCCCTATCTCCGCCCACCTCCACCACGCATT  120

Query  142  CCTCCGCCACCATGTCCAGTATGTACTTGTCCAGCACCA-C-C-ACC---T--ACGGAAG  193
            |||||||||||||||||||||||||||||||||| |||| | | |||   |  ||  || 
Sbjct  121  CCTCCGCCACCATGTCCAGTATGTACTTGTCCAGAACCATCGCCACCGCCTCCACC-AAC  179

Query  194  TTTTACCA-AC-GAGTccacc--cac--c----a-c-a--ccaccggaaacacctccgac  239
            | | |||  || || ||||||  |||  |    | | |  |||||||| || || |||||
Sbjct  180  TGTGACCCCACAGATTCCACCAACACTGCCTCCAACCATACCACCGGAGACTCCACCGAC  239

Query  240  cacaccaccagaaacacctcc-a---aa-tac-accacc-ggaaacacc--cccaaacac  290
                |||||||  ||||| || |   || |   |||| | ||   ||||  ||| | | |
Sbjct  240  GGGTCCACCAGCCACACCACCTACGGAAGTTTTACCAACAGGTC-CACCAACCCTA-C-C  296

Query  291  accaccggaaaatcctccaaccacaccacctgaac-acctccaaacacaccaccagatac  349
            ||||| | | |  ||||| |||| |||||| |||  |||||| |||||||||||| | ||
Sbjct  297  ACCACAG-ACA--CCTCCGACCATACCACCGGAAATACCTCCTAACACACCACCACAGAC  353

Query  350  tccaccaacacttccacacaaacacaccaccggagacacctccaaaca-cacc  401
            ||||||||| ||||||| ||||||| ||||||||||||||||||| || ||||
Sbjct  354  TCCACCAACGCTTCCAC-CAAACACGCCACCGGAGACACCTCCAA-CAACACC  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20157367349


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5