BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945883

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22460.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   544    4e-154


> AT4G22460.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:11839160-11839561 
REVERSE LENGTH=402
Length=402

 Score =  544 bits (294),  Expect = 4e-154
 Identities = 366/402 (91%), Gaps = 0/402 (0%)
 Strand=Plus/Plus

Query  23   ATGGCTCTTAAAAACTCTCTTGCGCTCTTCCTTCTCTTCAACTTCCTTTTCTTCACTCTA  82
            |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| 
Sbjct  1    ATGGCTCTTAAAGACTCTCTTGCGCTCCTCCTTCTCTTCAACATCCTTTTCTTCACTCTC  60

Query  83   ACTAATGCAACTCGCAGTACTAATTGTCCTCCTCCACCGGGCAAACACAACAAACATAAA  142
            |||| ||| ||||||||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct  61   ACTACTGCCACTCGCAGTACCAATTGTCCTCCTCCACCAGGAAAACACAACAAACAAAAA  120

Query  143  CCTAGCCCAACACCCACTAGCGGGACTTGCCCTAAAGATGCCTTAAAGCTCGGTGTTTGT  202
            ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||
Sbjct  121  CCTAGCCCAACACCCACTACCGGGACTTGTCCTAAAGATGCCTTAAAGGTCGGTGTTTGT  180

Query  203  GTTAACGCCCTTAACTTGTTGAACGACGTGACCCTCGGAACTCCTCCTGTGACTCCATGT  262
            |||||||| || |||||||| ||||   |||||| |||||||||||||||||||||||||
Sbjct  181  GTTAACGCACTCAACTTGTTAAACGGTTTGACCCCCGGAACTCCTCCTGTGACTCCATGT  240

Query  263  TGCAGCCTTATCAAGGGTTTGGTCGATCTTGAAGCTGCGGTTTGTCTTTGCACTGCCCTC  322
            |||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct  241  TGCAGCCTTATCGAGGGTTTGGTAGATCTTGAAGCTGCGATTTGTCTTTGCACTGCTCTC  300

Query  323  AAGGCTAGTGTTCTTGGCATTAACCTTAACCTTCCCATTGACCTTAGCTTGCTTCTCAAT  382
            |||||||||||||||||||| ||||||| |||||||||  |||| |||||||||||||||
Sbjct  301  AAGGCTAGTGTTCTTGGCATCAACCTTACCCTTCCCATCAACCTCAGCTTGCTTCTCAAT  360

Query  383  GTTTGCAGCAGAAAGGCACCACATGGCTTCCAATGCCCTTAA  424
             |||||| |||| ||||| ||| || |||||||| |||||||
Sbjct  361  ATTTGCAACAGAGAGGCATCACGTGACTTCCAATTCCCTTAA  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5