BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945884

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28860.1 | Symbols: ckl4 | casein kinase I-like 4 | chr4:142...   274    5e-73


> AT4G28860.1 | Symbols: ckl4 | casein kinase I-like 4 | chr4:14246283-14249544 
FORWARD LENGTH=1668
Length=1668

 Score =  274 bits (148),  Expect = 5e-73
 Identities = 176/189 (93%), Gaps = 3/189 (2%)
 Strand=Plus/Plus

Query  83   aaaaaaaCCCTAAATTTATATATCTATCCCTTGCGCATGATGATCCAGATTCGGTTGTGA  142
            |||||| ||||||||| |||| ||||||||||||||   |||||||||||||||||||||
Sbjct  9    AAAAAAGCCCTAAATTGATATCTCTATCCCTTGCGC---ATGATCCAGATTCGGTTGTGA  65

Query  143  TCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTAGGACGGAAGATTGGCT  202
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  66   TCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGGCG  125

Query  203  GTGGTTCCTTTGGAGAAAtttttttCGCTACACACATCGATACCTTCGAGATTGTAGCTG  262
            |||||||||||||||| |||||  | ||||| ||||||||||||||||||||||||||||
Sbjct  126  GTGGTTCCTTTGGAGAGATTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAGCTG  185

Query  263  TTAAGATCG  271
            |||||||||
Sbjct  186  TTAAGATCG  194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18347728385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5