BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945887

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22970.1 | Symbols: RSW4, AESP, ESP | homolog of separase | ...   171    7e-42


> AT4G22970.1 | Symbols: RSW4, AESP, ESP | homolog of separase 
| chr4:12033437-12043572 REVERSE LENGTH=6809
Length=6809

 Score =  171 bits (92),  Expect = 7e-42
 Identities = 140/163 (86%), Gaps = 4/163 (2%)
 Strand=Plus/Plus

Query  46    AAGCATGTAATAGGTGTGCATTCTACCTGGCTATACTCCACCAATGTAGC-GATTGTAAG  104
             |||||||||||||||||||||||||||||| |||||||||  |||||||| ||  |||||
Sbjct  1868  AAGCATGTAATAGGTGTGCATTCTACCTGGATATACTCCAGAAATGTAGCAGAC-GTAAG  1926

Query  105   ATTAGACAGACTATCGTGCAGATTCAAGAGAATTGGTTTTCAGCAGAGCATCTGATTAGA  164
             |||||||||| ||| || || |||| ||| |||||||| ||||| || ||||||||||||
Sbjct  1927  ATTAGACAGAATATTGTTCATATTCTAGAAAATTGGTTGTCAGCTGAACATCTGATTAGA  1986

Query  165   AGGTTACTAGGCCCTGCAGA-AATTGTAAAACAGTGGATTAAG  206
              |||||| |||||||| ||  ||||||||| || ||| |||||
Sbjct  1987  CGGTTACCAGGCCCTG-AGGCAATTGTAAAGCAATGGGTTAAG  2028



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22303961268


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5