BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945888
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12590.1 | Symbols: | Protein of unknown function DUF106, t... 867 0.0
> AT4G12590.1 | Symbols: | Protein of unknown function DUF106,
transmembrane | chr4:7451004-7453088 REVERSE LENGTH=1140
Length=1140
Score = 867 bits (469), Expect = 0.0
Identities = 651/740 (88%), Gaps = 8/740 (1%)
Strand=Plus/Plus
Query 20 AATGGCGGAAGATCTGGTTCTTGATACGGCCATCAGAGATTGGGTTTTGATCCCTCTCTC 79
||||||||| ||||| ||||| |||||||| ||||||||||||||| |||| ||||||||
Sbjct 112 AATGGCGGAGGATCTAGTTCTCGATACGGCGATCAGAGATTGGGTTCTGATTCCTCTCTC 171
Query 80 CGTCGTTATGGTTCTTATTGGAATTCTCCGTTACTTCGTATCTAAGCTCATGCGATCTTC 139
||| || |||||||| || || ||| | | ||||| || |||||||| ||||| ||| |
Sbjct 172 CGTAGTGATGGTTCTAATCGGTATTTTGAGATACTTTGTCTCTAAGCTTATGCGTTCTAC 231
Query 140 TCCGACTCCAGATGCGAAGATGGTCAAAGAAGGACAAGTTGTGATTAGGGCTAGGAAT-T 198
||| ||||| ||||| |||||||| |||||||| |||||||| ||||| ||| ||||| |
Sbjct 232 TCCAACTCCTGATGCTAAGATGGTTAAAGAAGGGCAAGTTGTTATTAGAGCTCGGAATCT 291
Query 199 TGAAGGCTGGTGCTAATTTTATCCCGCCTAAATCGTTCCGAGCTCGGAGATTCTACTTTA 258
| ||| | |||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 292 TAAAGTC-GGTGCTAATTTTATCCCGCCGAAATCATTCCGTGCTCGGAGATTCTACTTCA 350
Query 259 GCAATGAGGAAAATGGATTGTTACATGTTCCCAA-GGACCAAGCTCAAAATCCTCAAGC- 316
|||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||||| |||||
Sbjct 351 GCAACGAGGAGAATGGTTTGCTACATGTTCCCAAGGGA-GAAGCTCAAAATCCACAAGCT 409
Query 317 CCAGATGTTTTCTGATCCTAACATGGCCATGGATATGATGAAGAAAAATCTGTCAATGAT 376
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 410 GC-TATGTTTTCTGATCCTAACATGGCCATGGATATGATGAAGAAAAATCTTTCTATGAT 468
Query 377 TATACCACAGACGCTCACTTTTGCATGGGTCAACTTCTTCTTCTCTGGGTTTGTTGCAGC 436
||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 469 TATTCCTCAGACACTCACTTTTGCATGGGTCAACTTCTTCTTCTCTGGATTTGTTGCAGC 528
Query 437 CAAAATACCATTTCCGCTGACTCAGAGGTTCAGGTCTATGTTACAGAATGGAATCGACCT 496
||||||||||||||| ||||||||||||||||| || |||||||||||||| || ||| |
Sbjct 529 CAAAATACCATTTCCACTGACTCAGAGGTTCAGATCAATGTTACAGAATGGCATTGACTT 588
Query 497 GAGCACTGTTGATGTTAGCTACGTGAGCAGCCGTTCATGGTACTTCTTAAACTTGTTTGG 556
||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||||||
Sbjct 589 GAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTGGTACTTCTTGAACTTGTTTGG 648
Query 557 ATTAAGAGGCTTATTCAGTCTCATTCTTGGAGATGAAAATGCAATTGATGACACACAACG 616
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 649 ATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATGCCATTGATGACACACAACG 708
Query 617 AATGATGCAAATGGGTGGATTTGGTTTTGATGCATCAAAGAGCCTAAGTGCAGAGAAGGA 676
||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||
Sbjct 709 TATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGAGTCTGGGTGCAGAGAAGGA 768
Query 677 TGGTCTCGACATAATTCAACATGAATGGGCTCTACCTCGATTCGAGCACCGGGCAGAATC 736
|||| | |||||||| || || |||||||| ||||||||||| ||||| || ||||||||
Sbjct 769 TGGTTTAGACATAATCCAGCACGAATGGGCACTACCTCGATTTGAGCAGCGCGCAGAATC 828
Query 737 CGTTTTGAA-AAAACTTGTG 755
|| || || |||||| |||
Sbjct 829 TGTATT-AAGAAAACTCGTG 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5