BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945906
Length=226
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04470.1 | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv... 159 7e-39
AT4G04460.1 | Symbols: | Saposin-like aspartyl protease family... 106 1e-22
> AT4G04470.1 | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr4:2227661-2229280 REVERSE LENGTH=929
Length=929
Score = 159 bits (86), Expect = 7e-39
Identities = 90/92 (98%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 131 ACATAATGCTATCCTAGAATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 190
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ACATATTGCTATCCTAGAATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 716
Query 191 GTTTGTTTTGCTTTAACTTACAGAGTACTAAG 222
||||| ||||||||||||||||||||||||||
Sbjct 715 GTTTGATTTGCTTTAACTTACAGAGTACTAAG 684
> AT4G04460.1 | Symbols: | Saposin-like aspartyl protease family
protein | chr4:2224551-2227874 FORWARD LENGTH=1712
Length=1712
Score = 106 bits (57), Expect = 1e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 131 ACATAATGCTATCCTAGAATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 190
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 ACATATTGCTATCCTAGAATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10154085298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5