BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945907
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22220.1 | Symbols: ISU1, ATISU1 | SufE/NifU family protein ... 1016 0.0
> AT4G22220.1 | Symbols: ISU1, ATISU1 | SufE/NifU family protein
| chr4:11759155-11760960 REVERSE LENGTH=872
Length=872
Score = 1016 bits (550), Expect = 0.0
Identities = 578/591 (98%), Gaps = 3/591 (1%)
Strand=Plus/Plus
Query 4 CTT-CGAAACCCT--AAAAAACACGATGATGCTCAAGCAAGCTGCGAAGAAGGCTCTAGG 60
||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 55 CTTCCGAAACCCTAAAAAAAACACGATGATGCTCAAGCAAGCTGCGAAGAAGGCCCTAGG 114
Query 61 GCTTACGTCACGTCAATCAACGCCGTGGTCTGTTGGTATCTTCCGATCCTACCATGAGAA 120
||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 115 GCTTACGTCACGTCAATCAACACCGTGGTCTGTTGGTATCCTCCGAACCTACCATGAGAA 174
Query 121 CGTCATCGACCACTACGATAATCCCCGCAACGTTGGGTCTTTCGATAAGAATGATCCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CGTCATCGACCACTACGATAATCCCCGCAACGTTGGGTCTTTCGATAAGAATGATCCCAA 234
Query 181 CGTTGGTACGGGACTCGTAGGAGCTCCTGCTTGTGGTGATGTCATGAAGCTTCAGATCAA 240
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 235 CGTTGGTACGGGACTCGTAGGAGCTCCCGCTTGTGGTGATGTGATGAAGCTTCAAATCAA 294
Query 241 GGTCGATGAGAAGACTGGTCAAATCGTTGATGCTCGCTTCAAGACTTTTGGTTGTGGTTC 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 GGTCGATGAGAAGACTGGTCAAATCGTTGATGCTCGCTTTAAGACTTTTGGTTGTGGTTC 354
Query 301 AGCTATCGCTTCCTCATCTGTTGCCACTGAATGGGTGAAAGGCAAAGCTATGGAGGATGT 360
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGCCATCGCTTCTTCATCTGTTGCCACTGAATGGGTGAAAGGCAAAGCTATGGAGGATGT 414
Query 361 TCTGACCATCAAAAACACCGAAATCGCAAAGCATCTTTCTCTCCCACCAGTCAAGCTCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCTGACCATCAAAAACACCGAAATCGCAAAGCATCTTTCTCTCCCACCAGTCAAGCTCCA 474
Query 421 CTGCAGTATGTTGGCGGAGGACGCTATCAAGGCAGCTGTGAAAGACTACAAGGAGAAGCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CTGCAGTATGTTGGCGGAGGACGCTATCAAGGCAGCTGTGAAAGACTACAAGGAGAAGCG 534
Query 481 TGTGAAGACAAATGGTGCTGCAGCAGCAGGAGAAACCACACAGGCTTGATTCCTTTTACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TGTGAAGACAAATGGTGCTGCAGCAGCAGGAGAAACCACACAGGCTTGATTCCTTTTACT 594
Query 541 AGTGTGTATACCATAATGTGTATATGATGGTGAAAACAGGGGAGAAGTAGA 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AGTGTGTATACCATAATGTGTATATGATGGTGAAAACAGGGGAGAAGTAGA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5