BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945914
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22190.1 | Symbols: | unknown protein; Has 283 Blast hits t... 1698 0.0
> AT4G22190.1 | Symbols: | unknown protein; Has 283 Blast hits
to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa
- 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes
- 197 (source: NCBI BLink). | chr4:11741855-11743318
REVERSE LENGTH=1464
Length=1464
Score = 1698 bits (919), Expect = 0.0
Identities = 1021/1068 (96%), Gaps = 15/1068 (1%)
Strand=Plus/Plus
Query 2 ctctctctctctctACTCT-G-CAACAATGGATAGTCCGACGAGCATACGTAGTAAACCA 59
|||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||
Sbjct 172 CTCTCTCTCTCTCT-CTGTCGTCAACAATGGATAGTCCGACGAGCATACGTAGTAAACCA 230
Query 60 CCACCGGAGACTCTTTCTCCATGCGGTAGCCAACGACGGAGAAGCAGCTGCGACTCTAAC 119
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 231 CTACCGGAGACTCTTTCTCCATGCGGTAGTCAACGACGGAGAAGCAGCTGCGACTCTAAC 290
Query 120 CCACCTGAGTTCGAGTTCTGGCGTCTCACTAACTCTTCATTTCCTCAAGCTGACTCAGAT 179
|||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 291 CCACCTGAGTTCGAGTTCTGGCGTTTAACTAACTCTTCATTTCCTCAAGCTGATTCAGAT 350
Query 180 CTCCTCTCCGCTGACGAGCTTTTTCACGACGGTGTTCTTCTCCCTCTTCACCTCCTCTCC 239
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 351 CTCCTCTCCGCCGACGAGCTTTTTCACGACGGTGTTCTTCTCCCTCTTGACCTCCTCTCC 410
Query 240 GTGAAGTCAGAGCTTCCA-TCGGACCCGAATATCGTAGAATGCGACCCGGATCCATCTCC 298
|| || ||||||||| || || ||||||||||||| ||||||||||||||||||||||||
Sbjct 411 GTTAAATCAGAGCTT-CAGTCCGACCCGAATATCGCAGAATGCGACCCGGATCCATCTCC 469
Query 299 TTC-ACCGGTTACTTTGATTACAGAGCAAAAGAA-TGATCTTGAACCCGGTTTAGGATCC 356
||| || || || |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 470 TTCGACTGG-TAGTTTGATTACAGAGCAAAA-AAGTGATCTTGAACCCGGTTTAGGATCC 527
Query 357 GAGTTGACCCGAGAAACAACGGTTTCGAAGCGGTGGAGAGATATTTTCagaaagagcgaa 416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 528 GAGTTGACCCGAGAAACAACGGTTTCGAAGCGGTGGAGAGATATTTTCAGGAAGAGCGAA 587
Query 417 accaaaccgccggggaagaaagagaaggtgaaagagaataagaaggagaagaagaaaaCC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 ACCAAACCGCCGGGGAAGAAAGAGAAGGTGAAAGAGAATAAGAAGGAGAAGAAGAAAACC 647
Query 477 GGGTCGGGTCCCGGTTCGGGTTCGGGTTCAGGAGCAGAGCTGAATATCAACATTTGGCCG 536
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 648 GGGTCGGGTCCAAGTTCGGGTTCGGGTTCAGGAGCGGAGCTGAATATCAACATTTGGCCG 707
Query 537 TTTTCAAGAAGTAGATCCGCAGGGAACAACGTGACCCGACCCAGAATGTCGTTTGGAGCT 596
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 708 TTTTCAAGAAGTAGATCCGCTGGTAACAACGTGACCCGACCGAGAATGTCGTTTGGAGCT 767
Query 597 CCGACGACTCGGAAAGTCAGCAGTGCGCCGTGTTCACGTAGCAACTCCACCGGAGAATCC 656
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CCGACGACCCGGAAAGTAAGCAGTGCGCCGTGTTCACGTAGCAACTCCACCGGAGAATCC 827
Query 657 AAATCGAGGAAGTGGCCGAGTAGTCCCGGTCGTAACGGCGTGCATCTTGGTCGGAGCAGT 716
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 828 AAATCGAGGAAGTGGCCGAGTAGTCCCAGTCGTAACGGCGTGCATCTTGGTCGGAATAGT 887
Query 717 CCGGTTTGGCAAGTCCGGCGTGGAGGTGGAGCTCCGGTTGGGAAAACGATACCCGAGCCG 776
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 888 CCGGTTTGGCAAGTCCGGCGTGGAGGAGGAGCTCCGGTTGGGAAAACGATACCGGAACCG 947
Query 777 ATGGGTCGGGTTGTGGGTAAAAGGGAGATTCCCGAGACGCGTAAGGGTAAAACGGTAATT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 948 ATGGGTCGGGTTGTGGGTAAAAGGGAGATTCCCGAGACGCGTAAGGGTAAAACAGTAATT 1007
Query 837 GAGAGCAATAAAGCAAAAGTCTTGAACTTGAACGTGCCTATGTGCATCGGTTATCGGAGC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GAGAGCAATAAAGCAAAAGTCTTGAACTTGAACGTGCCTATGTGCATCGGTTATCGGAGC 1067
Query 897 CGGTTAAGCTGCAGAACCGAAGAGAGT-G-G-TGGTGGTAATAGTAACATTGGGAGTGAC 953
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1068 CGGTTAAGCTGCAGAACCGAAGAGAGTAGTGGTGGTGGTAATAGTAACATTGGGAGTGAC 1127
Query 954 AA---TAATAATAATAACGTCAACGCTAATAATCCTAATCCTAATGGTTTATTTGGCTTT 1010
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AACAATAATAATAATAACGCCAACGCTAATAATCCTAATCCTAATGGTTTATTTGGCTTT 1187
Query 1011 CGTAATCTCTTCATTAAGAAAGTTTATTGACTTTATTTGTTTTGTTTT 1058
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1188 CGTAATCTCTTCATTAAGAAAGTGTATTGACTTTATTTGTTTTGTTTT 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5