BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945917
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22660.1 | Symbols: | F-box family protein with a domain of... 619 2e-176
AT4G22170.1 | Symbols: | F-box family protein with a domain of... 300 2e-80
AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 204 2e-51
> AT4G22660.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11914981-11916171 REVERSE
LENGTH=1191
Length=1191
Score = 619 bits (335), Expect = 2e-176
Identities = 951/1232 (77%), Gaps = 108/1232 (9%)
Strand=Plus/Plus
Query 25 AGAACCATAACCCTAATTCCTGGTCGGACCTTCCTCTAGATCTCTTGAATTTGGTGTTT- 83
||||||| ||||||||| |||||||||| |||||||||||||||||||| || || |||
Sbjct 8 AGAACCAAAACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTTAGT-TTTC 66
Query 84 GAACGCCTTAGCTTTGCTAGTTTCCAACGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCT 143
||||||| |||||||||| ||| | || |||||| || |||||||||||||||||||||
Sbjct 67 AAACGCCTCAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGGTACTCT 126
Query 144 GCTTCGAGACAATGCGTGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCCGAAGac 203
||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 127 GCTTCGAAACAATCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAAGAC 186
Query 204 aacaacaacaacaacaacaacaacaacaacaacaacaacaaTTCATGCAAGTTGTTCAAT 263
|| || | ||||||||| || | || || || | ||| | || ||||||
Sbjct 187 AA-AA-A-CAACAACAA-AA-A-CAGTT-CATG--CA-CGATT--T-----TT-TTCAAT 228
Query 264 CCCGATGAAAAACAAAAACTTTACAAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGT 323
||||| || ||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 229 CCCGAGGACAAAGACCAACTTTACCAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGT 288
Query 324 GTGTGTCTAGCAACCTATGGAAGCTGGCTCCTTACG-AGAGATCCACGGTATAATCTCTA 382
|| |||||||||||||||||||| |||||||| | | | |||| || ||||||||| ||
Sbjct 289 GTTTGTCTAGCAACCTATGGAAGTTGGCTCCTGATGCA-AGATTCAAAGTATAATCTATA 347
Query 383 CATTTTGAATCTTTTTACCCAAGA-AAGGATTGATCTGCCATCTGTAGAGTCACAAC--- 438
||||||||||| || ||| | || ||| || | ||| || || | || |||||||
Sbjct 348 CATTTTGAATCCATTCACCTACGAGAAG-ATCGGTCTTCCCGCTATTGAATCACAACAAG 406
Query 439 TTGGAATAACAAAGATCGAGCGAGGTTTAGATGATTGGTTT-C-A-CGTTTCTAAGGATC 495
|||| || |||| | || | | |||||||| | ||| | | | |||| | | |||
Sbjct 407 TTGGCATGGTAAAGGTTGACCAAACCATAGATGAT-GATTTTCTAAC-TTTCGACG-ATC 463
Query 496 ACTTCCAAAGGCA-G--AT-CAAAGAGCTT-TGCAT-CCG-A--T-CCCCTGTGATTTGG 545
|| ||| | | | || ||||| | | | || ||| | | |||||||| |||||
Sbjct 464 ACAACCAC-GTTAAGTTATTCAAAG-G-TAATA-ATACCGTACGTACCCCTGTGTTTTGG 519
Query 546 ATTGACGAGAAAACCAAAGACTATATAGTTCTTTGGGGACTTGGAGGTTTGTGTGTCCTT 605
|||||||||||||||||||| || |||| ||| ||||| |||||| || |||||| ||
Sbjct 520 ATTGACGAGAAAACCAAAGAGTACATAGCTCTGTGGGGGCTTGGATATTGGTGTGTGGTT 579
Query 606 TATTCCAAGAAAGGAGATACCGC-GTGGAATCAGCTTCCGGAAATT-TCTCAC-TG-TCT 661
||| ||||||| ||||||| | ||||||||| |||| |||||| | | | | |||
Sbjct 580 TATGCCAAGAACGGAGATAA-GTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCT 638
Query 662 TCACATGGTTTACAAAGATCACAAGCTTTACTTC-TCTAGC-AGC-GAAAATATTTTCAC 718
| ||||||||||||| |||||||||||||||| | | |||| | | |||| | |||||||
Sbjct 639 TGACATGGTTTACAAGGATCACAAGCTTTACT-CATTTAGCTA-CAGAAA-TCTTTTCAC 695
Query 719 AATCTTAAATTTTTCTAGAGAGGTTCCTCAACAAATT-TTTCAATGTGGTATGGATCTGT 777
|||| || |||||||| ||||| |||||| | ||| ||||||||| |||| || | |
Sbjct 696 AATCCTAGATTTTTCTGGAGAGATTCCTCGA-AAAGCCTTTCAATGTTTTATGCATGTCT 754
Query 778 TAATA-AT-TAGAATGAGTCTAGGTCGTCGTTGTCATCGGCTAAGTAATTCATGGTTTGT 835
| || || | || || || || ||| |||| ||| || ||||||||||||||| ||
Sbjct 755 -A-TAGATCT-GAGTG-GT-TAAGTCCTCGTAGTCGTCAATTAAGTAATTCATGGTGCGT 809
Query 836 TGATGAGACAAAACTTGTAGTCACAGTAACAGGAAATGTCCT-TAGGGTTCAAAGAATGT 894
|| ||||||||||||||||||||||||||| ||| ||||||| | || || |||||||||
Sbjct 810 TGCTGAGACAAAACTTGTAGTCACAGTAACCGGAGATGTCCTCTTGG-TTGAAAGAATGT 868
Query 895 TAAGACCTAGGTCTGGAATCCAGTCATTCCGTGTCTGTAAAGTTTTCC-C--CA---A-A 947
|||||| | ||||| |||||||||||||| |||| || ||||| | || | |
Sbjct 869 TAAGACATTGGTCTAGAATCCAGTCATTCAACGTCTACAA-GTTTTATTCGTCAGGGACA 927
Query 948 TAT---GA-AGA-A-G---TTG---ATTCTTTGGGCGACGAGGCACTGCTTTTGGATTTA 995
| | || | | | | ||| |||||||||||||||||||| ||||||||||| ||
Sbjct 928 TTTCTTGATAAATATGAACTTGCTGATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTA 987
Query 996 GGTGTCACTGTGCTCGTCAATGACA-TTGAGGGGCTCAAAAGAAATTGC-ATCTATCTCA 1053
|| |||| ||||||| |||||| | ||||||| ||| | |||||| | || ||| |||
Sbjct 988 GGCATCACCGTGCTCGCCAATGA-AGTTGAGGGACTCCATAGAAATA-CTATATATTTCA 1045
Query 1054 GTGGTAGTCATGGAAA-GAAGA-AAAATGGTATCTTTATCTTTAATTTCGAGACAAAAAA 1111
||| ||| |||| | | || | |||| | | ||||| | || |||| ||||||| |
Sbjct 1046 GTGATAGCCATG-ACACGACCACAAAA-GATCTCTTTCTGTTCAATTACGAGACACGGGA 1103
Query 1112 GATGGAGTTGCTGCG-AAA----ATTT-GATTGTTCGTCAGTTCAACTCTCTAGAGCTCG 1165
||||||| |||| ||| |||| |||||||||| | || |||||||| | ||||
Sbjct 1104 GATGGAGCCACTGCACAAATTTGATTTCGATTGTTCGTTACTTGAACTCTCT-G--CTCG 1160
Query 1166 ATGGTTCTTACCAAG-TTTAACGCATACATGA 1196
||||||||||||||| ||| |||||||||||
Sbjct 1161 ATGGTTCTTACCAAGCTTTT-CGCATACATGA 1191
> AT4G22170.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11736653-11737744 FORWARD
LENGTH=1092
Length=1092
Score = 300 bits (162), Expect = 2e-80
Identities = 313/381 (82%), Gaps = 29/381 (8%)
Strand=Plus/Plus
Query 26 GAACCATAACCCTAATTCCTGGTCGGACCTTCCTCTA-GATCTCTTGAATTTGGTGTTTG 84
||| |||||||||||||||||||| || ||||||| | ||||||||||| |||||||| |
Sbjct 9 GAAACATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTTGGTGTTCG 67
Query 85 AACGCCTTAGCTTTGCTAGTTTCCAA-CGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCT 143
||||||| |||||||||| ||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 68 AACGCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCT 126
Query 144 GCTTCGAGACAATGCG-TGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCCGAAGa 202
||||||||||||| || |||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 127 GCTTCGAGACAAT-CGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGA 185
Query 203 caacaacaacaacaacaacaacaacaacaacaacaacaacaaTTCATGCAAGTTGTTCAA 262
|||||||||||| ||||||| || || | || | ||| | |
Sbjct 186 CAACAACAACAAGAACAACAGTT-CATG--CA-CG-------TTGTT-CAA-T----C-- 226
Query 263 TCCCGATGAAAAACAAAAACTTTACAAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAG 322
|| ||||||||| | |||||||||||||||||| |||||| || ||||||||||||||
Sbjct 227 -CC-GATGAAAAAGACAAACTTTACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAG 284
Query 323 TGTGTGTCTAGCAACCTATGGAAGCTGGCTCCTTACGAG-AGATCCACGGTATAATCTCT 381
||| ||| |||||||||||||| ||| |||| | | | |||||| | || ||||||||
Sbjct 285 TGTTTGTAGGGCAACCTATGGAAGTTGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCT 343
Query 382 ACATTTTGAATCTTTTTACCC 402
| ||||||||||| |||||||
Sbjct 344 ATATTTTGAATCTCTTTACCC 364
> AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16,
similar to protein; blastp match of 28% identity and 3.1e-07
P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16
{Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234
FORWARD LENGTH=1182
Length=1182
Score = 204 bits (110), Expect = 2e-51
Identities = 142/158 (90%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 40 ATTCCTGGTCGGACCTTCCTCTAGATCTCTTGAATTTGGTGTTTGAACGCCTTAGCTTTG 99
||||||||||||| |||||||||||||||||| |||| ||||| ||||||| | ||||
Sbjct 74 ATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGGATTTAGTGTTCCAACGCCTCAATTTTG 133
Query 100 CTAGTTTCCAACGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATGCG 159
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 134 CTAATTTCCAACGAGCCAAATCTGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATGCG 193
Query 160 TGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCC 197
|| |||||| ||||||||||||||||||| ||||||
Sbjct 194 TGACCAAAACTAAGATCCCTTGGCTGATTCTATTCCCC 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5