BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945917 Length=1216 Score E Sequences producing significant alignments: (Bits) Value AT4G22660.1 | Symbols: | F-box family protein with a domain of... 619 2e-176 AT4G22170.1 | Symbols: | F-box family protein with a domain of... 300 2e-80 AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 204 2e-51 > AT4G22660.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr4:11914981-11916171 REVERSE LENGTH=1191 Length=1191 Score = 619 bits (335), Expect = 2e-176 Identities = 951/1232 (77%), Gaps = 108/1232 (9%) Strand=Plus/Plus Query 25 AGAACCATAACCCTAATTCCTGGTCGGACCTTCCTCTAGATCTCTTGAATTTGGTGTTT- 83 ||||||| ||||||||| |||||||||| |||||||||||||||||||| || || ||| Sbjct 8 AGAACCAAAACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTTAGT-TTTC 66 Query 84 GAACGCCTTAGCTTTGCTAGTTTCCAACGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCT 143 ||||||| |||||||||| ||| | || |||||| || ||||||||||||||||||||| Sbjct 67 AAACGCCTCAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGGTACTCT 126 Query 144 GCTTCGAGACAATGCGTGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCCGAAGac 203 ||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||| ||||| Sbjct 127 GCTTCGAAACAATCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAAGAC 186 Query 204 aacaacaacaacaacaacaacaacaacaacaacaacaacaaTTCATGCAAGTTGTTCAAT 263 || || | ||||||||| || | || || || | ||| | || |||||| Sbjct 187 AA-AA-A-CAACAACAA-AA-A-CAGTT-CATG--CA-CGATT--T-----TT-TTCAAT 228 Query 264 CCCGATGAAAAACAAAAACTTTACAAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGT 323 ||||| || ||| | |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 229 CCCGAGGACAAAGACCAACTTTACCAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGT 288 Query 324 GTGTGTCTAGCAACCTATGGAAGCTGGCTCCTTACG-AGAGATCCACGGTATAATCTCTA 382 || |||||||||||||||||||| |||||||| | | | |||| || ||||||||| || Sbjct 289 GTTTGTCTAGCAACCTATGGAAGTTGGCTCCTGATGCA-AGATTCAAAGTATAATCTATA 347 Query 383 CATTTTGAATCTTTTTACCCAAGA-AAGGATTGATCTGCCATCTGTAGAGTCACAAC--- 438 ||||||||||| || ||| | || ||| || | ||| || || | || ||||||| Sbjct 348 CATTTTGAATCCATTCACCTACGAGAAG-ATCGGTCTTCCCGCTATTGAATCACAACAAG 406 Query 439 TTGGAATAACAAAGATCGAGCGAGGTTTAGATGATTGGTTT-C-A-CGTTTCTAAGGATC 495 |||| || |||| | || | | |||||||| | ||| | | | |||| | | ||| Sbjct 407 TTGGCATGGTAAAGGTTGACCAAACCATAGATGAT-GATTTTCTAAC-TTTCGACG-ATC 463 Query 496 ACTTCCAAAGGCA-G--AT-CAAAGAGCTT-TGCAT-CCG-A--T-CCCCTGTGATTTGG 545 || ||| | | | || ||||| | | | || ||| | | |||||||| ||||| Sbjct 464 ACAACCAC-GTTAAGTTATTCAAAG-G-TAATA-ATACCGTACGTACCCCTGTGTTTTGG 519 Query 546 ATTGACGAGAAAACCAAAGACTATATAGTTCTTTGGGGACTTGGAGGTTTGTGTGTCCTT 605 |||||||||||||||||||| || |||| ||| ||||| |||||| || |||||| || Sbjct 520 ATTGACGAGAAAACCAAAGAGTACATAGCTCTGTGGGGGCTTGGATATTGGTGTGTGGTT 579 Query 606 TATTCCAAGAAAGGAGATACCGC-GTGGAATCAGCTTCCGGAAATT-TCTCAC-TG-TCT 661 ||| ||||||| ||||||| | ||||||||| |||| |||||| | | | | ||| Sbjct 580 TATGCCAAGAACGGAGATAA-GTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCT 638 Query 662 TCACATGGTTTACAAAGATCACAAGCTTTACTTC-TCTAGC-AGC-GAAAATATTTTCAC 718 | ||||||||||||| |||||||||||||||| | | |||| | | |||| | ||||||| Sbjct 639 TGACATGGTTTACAAGGATCACAAGCTTTACT-CATTTAGCTA-CAGAAA-TCTTTTCAC 695 Query 719 AATCTTAAATTTTTCTAGAGAGGTTCCTCAACAAATT-TTTCAATGTGGTATGGATCTGT 777 |||| || |||||||| ||||| |||||| | ||| ||||||||| |||| || | | Sbjct 696 AATCCTAGATTTTTCTGGAGAGATTCCTCGA-AAAGCCTTTCAATGTTTTATGCATGTCT 754 Query 778 TAATA-AT-TAGAATGAGTCTAGGTCGTCGTTGTCATCGGCTAAGTAATTCATGGTTTGT 835 | || || | || || || || ||| |||| ||| || ||||||||||||||| || Sbjct 755 -A-TAGATCT-GAGTG-GT-TAAGTCCTCGTAGTCGTCAATTAAGTAATTCATGGTGCGT 809 Query 836 TGATGAGACAAAACTTGTAGTCACAGTAACAGGAAATGTCCT-TAGGGTTCAAAGAATGT 894 || ||||||||||||||||||||||||||| ||| ||||||| | || || ||||||||| Sbjct 810 TGCTGAGACAAAACTTGTAGTCACAGTAACCGGAGATGTCCTCTTGG-TTGAAAGAATGT 868 Query 895 TAAGACCTAGGTCTGGAATCCAGTCATTCCGTGTCTGTAAAGTTTTCC-C--CA---A-A 947 |||||| | ||||| |||||||||||||| |||| || ||||| | || | | Sbjct 869 TAAGACATTGGTCTAGAATCCAGTCATTCAACGTCTACAA-GTTTTATTCGTCAGGGACA 927 Query 948 TAT---GA-AGA-A-G---TTG---ATTCTTTGGGCGACGAGGCACTGCTTTTGGATTTA 995 | | || | | | | ||| |||||||||||||||||||| ||||||||||| || Sbjct 928 TTTCTTGATAAATATGAACTTGCTGATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTA 987 Query 996 GGTGTCACTGTGCTCGTCAATGACA-TTGAGGGGCTCAAAAGAAATTGC-ATCTATCTCA 1053 || |||| ||||||| |||||| | ||||||| ||| | |||||| | || ||| ||| Sbjct 988 GGCATCACCGTGCTCGCCAATGA-AGTTGAGGGACTCCATAGAAATA-CTATATATTTCA 1045 Query 1054 GTGGTAGTCATGGAAA-GAAGA-AAAATGGTATCTTTATCTTTAATTTCGAGACAAAAAA 1111 ||| ||| |||| | | || | |||| | | ||||| | || |||| ||||||| | Sbjct 1046 GTGATAGCCATG-ACACGACCACAAAA-GATCTCTTTCTGTTCAATTACGAGACACGGGA 1103 Query 1112 GATGGAGTTGCTGCG-AAA----ATTT-GATTGTTCGTCAGTTCAACTCTCTAGAGCTCG 1165 ||||||| |||| ||| |||| |||||||||| | || |||||||| | |||| Sbjct 1104 GATGGAGCCACTGCACAAATTTGATTTCGATTGTTCGTTACTTGAACTCTCT-G--CTCG 1160 Query 1166 ATGGTTCTTACCAAG-TTTAACGCATACATGA 1196 ||||||||||||||| ||| ||||||||||| Sbjct 1161 ATGGTTCTTACCAAGCTTTT-CGCATACATGA 1191 > AT4G22170.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr4:11736653-11737744 FORWARD LENGTH=1092 Length=1092 Score = 300 bits (162), Expect = 2e-80 Identities = 313/381 (82%), Gaps = 29/381 (8%) Strand=Plus/Plus Query 26 GAACCATAACCCTAATTCCTGGTCGGACCTTCCTCTA-GATCTCTTGAATTTGGTGTTTG 84 ||| |||||||||||||||||||| || ||||||| | ||||||||||| |||||||| | Sbjct 9 GAAACATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTTGGTGTTCG 67 Query 85 AACGCCTTAGCTTTGCTAGTTTCCAA-CGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCT 143 ||||||| |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||| Sbjct 68 AACGCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCT 126 Query 144 GCTTCGAGACAATGCG-TGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCCGAAGa 202 ||||||||||||| || |||||||||| ||||||| |||||||||||||||||| ||||| Sbjct 127 GCTTCGAGACAAT-CGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGA 185 Query 203 caacaacaacaacaacaacaacaacaacaacaacaacaacaaTTCATGCAAGTTGTTCAA 262 |||||||||||| ||||||| || || | || | ||| | | Sbjct 186 CAACAACAACAAGAACAACAGTT-CATG--CA-CG-------TTGTT-CAA-T----C-- 226 Query 263 TCCCGATGAAAAACAAAAACTTTACAAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAG 322 || ||||||||| | |||||||||||||||||| |||||| || |||||||||||||| Sbjct 227 -CC-GATGAAAAAGACAAACTTTACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAG 284 Query 323 TGTGTGTCTAGCAACCTATGGAAGCTGGCTCCTTACGAG-AGATCCACGGTATAATCTCT 381 ||| ||| |||||||||||||| ||| |||| | | | |||||| | || |||||||| Sbjct 285 TGTTTGTAGGGCAACCTATGGAAGTTGGTTCCTAATG-GTAGATCCTCTGTTTAATCTCT 343 Query 382 ACATTTTGAATCTTTTTACCC 402 | ||||||||||| ||||||| Sbjct 344 ATATTTTGAATCTCTTTACCC 364 > AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, similar to protein; blastp match of 28% identity and 3.1e-07 P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16 {Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234 FORWARD LENGTH=1182 Length=1182 Score = 204 bits (110), Expect = 2e-51 Identities = 142/158 (90%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 40 ATTCCTGGTCGGACCTTCCTCTAGATCTCTTGAATTTGGTGTTTGAACGCCTTAGCTTTG 99 ||||||||||||| |||||||||||||||||| |||| ||||| ||||||| | |||| Sbjct 74 ATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGGATTTAGTGTTCCAACGCCTCAATTTTG 133 Query 100 CTAGTTTCCAACGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATGCG 159 ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 134 CTAATTTCCAACGAGCCAAATCTGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATGCG 193 Query 160 TGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCC 197 || |||||| ||||||||||||||||||| |||||| Sbjct 194 TGACCAAAACTAAGATCCCTTGGCTGATTCTATTCCCC 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59738648550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5