BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945918
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 464 8e-130
AT4G22170.1 | Symbols: | F-box family protein with a domain of... 303 2e-81
> AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16,
similar to protein; blastp match of 28% identity and 3.1e-07
P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16
{Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234
FORWARD LENGTH=1182
Length=1182
Score = 464 bits (251), Expect = 8e-130
Identities = 506/621 (81%), Gaps = 49/621 (8%)
Strand=Plus/Plus
Query 30 AAGCAAAACCCTAATTCTCATAAGCGTCTCAGACAACTAGAAACATCCAATTACTGGTCG 89
||||| |||||||||||||| ||||||||||| || ||| ||||| ||| |||||||
Sbjct 28 AAGCATAACCCTAATTCTCAAAAGCGTCTCAG---ACGAGATTCATCCCATTCCTGGTCG 84
Query 90 GAGCTTCCTATATATCTCTTGAATTTGGTGTTCCAACGCCTCAGCTTTGCTAATTTCCAG 149
||||||||| || |||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 85 GAGCTTCCTCTAGATCTCTTGGATTTAGTGTTCCAACGCCTCAATTTTGCTAATTTCCA- 143
Query 150 A-GAGCTAAATCAGTATGCTCCTCTTGGCACTCTGCTTCGAGACAATCG-GTGCCCAAAA 207
| |||| ||||| || || || |||||| |||||||||||||||||| | ||| ||||||
Sbjct 144 ACGAGCCAAATCTGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAAT-GCGTGACCAAAA 202
Query 208 GTCAGA-CCCATTGGCTGATACTCTTCCCCGAAAACATC-AACAAAGAA-AAATC-TTGC 263
| ||| ||| ||||||||| || |||||| ||| | | || ||| || || || || |
Sbjct 203 CTAAGATCCC-TTGGCTGATTCTATTCCCC--AAA-AGCGAA-AAA-AACAATTCATT-C 255
Query 264 AAGTTGTTCAATCCCGAGGAAAAAGACAAACTTTACAAGACGCAAGATCTTGGTTTGGAA 323
| | | ||||||||||||||||| |||||| |||||| ||||||||||||||| |||||
Sbjct 256 ACGCTCCTCAATCCCGAGGAAAAACACAAACGTTACAAAACGCAAGATCTTGGTGTGGAA 315
Query 324 TTTG-GAAGGAGTCTTTGTATAGCAACCTATGGAAGTTGGCTTCTTATGCAAGATTCAAA 382
|||| ||| | || |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 316 TTTGCGAA-GTGTGTTTGTATAGCAACCTATGGAAGTTGGCTCCTTATGCAAGATTCAAA 374
Query 383 GTATACTGACAATAGTCTATACATTGTGAATCTATTCACCCGCGAGAGAATCAATCTTCC 442
|| || | | || | ||||| |||||| ||||||||||||||| ||||| |||||
Sbjct 375 GTGTAAT--C--TA----A-ACATTTTGAATCCATTCACCCGCGAGAGGATCAACCTTCC 425
Query 443 TCCTGTGGAGTCACAAATTGGCATGGTAAATGTTGAAATAATATGGAATACCATGTATTT 502
|||||||||||||||| ||||| |||||| ||| | | | || | || ||| ||
Sbjct 426 TCCTGTGGAGTCACAACGTGGCAAGGTAAAGGTT-AGACGA-ATC-A-TAG-ATG-ATA- 478
Query 503 G-TTTCGCATTTCAAAC-ATGAAAACTGA-GTCCAAGTCCGAAGT-TATGCA-TATTCAA 557
| |||||||||||| || || | | | || | | | |||| || | |||| | ||| |
Sbjct 479 GATTTCGCATTTCACACTATCACATCGGAAG-CGA-GTCCAAA-TATATG-AGTATAGGA 534
Query 558 TCCCCTGTGTTTTGGATTGACGAGAATACCAAAGATTATATAGTCATTTGGGGACTT-G- 615
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 535 TCCCCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATATAGTTTTTTGGGGACTTAGA 594
Query 616 GATTTCGGTGTGTGGTTTCTG 636
|||| |||||||||||||||
Sbjct 595 GATT--GGTGTGTGGTTTCTG 613
> AT4G22170.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11736653-11737744 FORWARD
LENGTH=1092
Length=1092
Score = 303 bits (164), Expect = 2e-81
Identities = 314/384 (82%), Gaps = 19/384 (5%)
Strand=Plus/Plus
Query 78 AATTACTGGTCGGAGCTTCCTATA-TATCTCTTGAATTTGGTGTTCCAACGCCTCAGCTT 136
|||| |||||| || |||||| | |||||||||| ||||||||| |||||||||||||
Sbjct 22 AATTCCTGGTCTGATCTTCCT-CACGATCTCTTGAACTTGGTGTTCGAACGCCTCAGCTT 80
Query 137 TGCTAATTTCCAGAGAGCTAAATCAGTATGCTCCTCTTGGCACTCTGCTTCGAGACAATC 196
|||||||||| | |||| | || || || || |||||| |||||||||||||||||||
Sbjct 81 TGCTAATTTCAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATC 140
Query 197 GGTGCCCAAAAGTCAGACCCATTGGCTGATACTCTTCCCCGAAAACATCAACAA-A-GAA 254
||||||||||| ||||| |||||||||||| |||||||| ||| ||| |||||| | |||
Sbjct 141 GGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGACAACAACAACAAGAA 200
Query 255 -AA-A-T-CTTGCAAGTTGTTCAATCCCGAGGAAAAAGACAAACTTTACAAGACGCAAGA 310
|| | | | |||| ||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 201 CAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTTACAAAACGCAACA 260
Query 311 TCTTGGTTTGGAATTTGGAAGGAGTCTTTGTATAGCAACCTATGGAAGTTGGCTTCTTA- 369
||||| | |||||||| || |||| |||||| |||||||||||||||||| ||| ||
Sbjct 261 TCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAAGTTGG-TTCCTAA 319
Query 370 TGCAAGATTCAAAGTATACTGACAATAGTCTATACATTGTGAATCTATTCACCCGCGAGA 429
|| |||| | || | | | | | |||||| || ||||||| || ||||||||||
Sbjct 320 TGGTAGATCCTCTGT-T--T-A-A-TC-TCTATAT-TT-TGAATCTCTTTACCCGCGAGA 370
Query 430 GAATCAATCTTCCTCCTGTGGAGT 453
|||||||||| | ||| |||||||
Sbjct 371 GAATCAATCTACATCCCGTGGAGT 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5