BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945918 Length=1198 Score E Sequences producing significant alignments: (Bits) Value AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 464 8e-130 AT4G22170.1 | Symbols: | F-box family protein with a domain of... 303 2e-81 > AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, similar to protein; blastp match of 28% identity and 3.1e-07 P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16 {Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234 FORWARD LENGTH=1182 Length=1182 Score = 464 bits (251), Expect = 8e-130 Identities = 506/621 (81%), Gaps = 49/621 (8%) Strand=Plus/Plus Query 30 AAGCAAAACCCTAATTCTCATAAGCGTCTCAGACAACTAGAAACATCCAATTACTGGTCG 89 ||||| |||||||||||||| ||||||||||| || ||| ||||| ||| ||||||| Sbjct 28 AAGCATAACCCTAATTCTCAAAAGCGTCTCAG---ACGAGATTCATCCCATTCCTGGTCG 84 Query 90 GAGCTTCCTATATATCTCTTGAATTTGGTGTTCCAACGCCTCAGCTTTGCTAATTTCCAG 149 ||||||||| || |||||||| |||| |||||||||||||||| |||||||||||||| Sbjct 85 GAGCTTCCTCTAGATCTCTTGGATTTAGTGTTCCAACGCCTCAATTTTGCTAATTTCCA- 143 Query 150 A-GAGCTAAATCAGTATGCTCCTCTTGGCACTCTGCTTCGAGACAATCG-GTGCCCAAAA 207 | |||| ||||| || || || |||||| |||||||||||||||||| | ||| |||||| Sbjct 144 ACGAGCCAAATCTGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAAT-GCGTGACCAAAA 202 Query 208 GTCAGA-CCCATTGGCTGATACTCTTCCCCGAAAACATC-AACAAAGAA-AAATC-TTGC 263 | ||| ||| ||||||||| || |||||| ||| | | || ||| || || || || | Sbjct 203 CTAAGATCCC-TTGGCTGATTCTATTCCCC--AAA-AGCGAA-AAA-AACAATTCATT-C 255 Query 264 AAGTTGTTCAATCCCGAGGAAAAAGACAAACTTTACAAGACGCAAGATCTTGGTTTGGAA 323 | | | ||||||||||||||||| |||||| |||||| ||||||||||||||| ||||| Sbjct 256 ACGCTCCTCAATCCCGAGGAAAAACACAAACGTTACAAAACGCAAGATCTTGGTGTGGAA 315 Query 324 TTTG-GAAGGAGTCTTTGTATAGCAACCTATGGAAGTTGGCTTCTTATGCAAGATTCAAA 382 |||| ||| | || |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 316 TTTGCGAA-GTGTGTTTGTATAGCAACCTATGGAAGTTGGCTCCTTATGCAAGATTCAAA 374 Query 383 GTATACTGACAATAGTCTATACATTGTGAATCTATTCACCCGCGAGAGAATCAATCTTCC 442 || || | | || | ||||| |||||| ||||||||||||||| ||||| ||||| Sbjct 375 GTGTAAT--C--TA----A-ACATTTTGAATCCATTCACCCGCGAGAGGATCAACCTTCC 425 Query 443 TCCTGTGGAGTCACAAATTGGCATGGTAAATGTTGAAATAATATGGAATACCATGTATTT 502 |||||||||||||||| ||||| |||||| ||| | | | || | || ||| || Sbjct 426 TCCTGTGGAGTCACAACGTGGCAAGGTAAAGGTT-AGACGA-ATC-A-TAG-ATG-ATA- 478 Query 503 G-TTTCGCATTTCAAAC-ATGAAAACTGA-GTCCAAGTCCGAAGT-TATGCA-TATTCAA 557 | |||||||||||| || || | | | || | | | |||| || | |||| | ||| | Sbjct 479 GATTTCGCATTTCACACTATCACATCGGAAG-CGA-GTCCAAA-TATATG-AGTATAGGA 534 Query 558 TCCCCTGTGTTTTGGATTGACGAGAATACCAAAGATTATATAGTCATTTGGGGACTT-G- 615 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 535 TCCCCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATATAGTTTTTTGGGGACTTAGA 594 Query 616 GATTTCGGTGTGTGGTTTCTG 636 |||| ||||||||||||||| Sbjct 595 GATT--GGTGTGTGGTTTCTG 613 > AT4G22170.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr4:11736653-11737744 FORWARD LENGTH=1092 Length=1092 Score = 303 bits (164), Expect = 2e-81 Identities = 314/384 (82%), Gaps = 19/384 (5%) Strand=Plus/Plus Query 78 AATTACTGGTCGGAGCTTCCTATA-TATCTCTTGAATTTGGTGTTCCAACGCCTCAGCTT 136 |||| |||||| || |||||| | |||||||||| ||||||||| ||||||||||||| Sbjct 22 AATTCCTGGTCTGATCTTCCT-CACGATCTCTTGAACTTGGTGTTCGAACGCCTCAGCTT 80 Query 137 TGCTAATTTCCAGAGAGCTAAATCAGTATGCTCCTCTTGGCACTCTGCTTCGAGACAATC 196 |||||||||| | |||| | || || || || |||||| ||||||||||||||||||| Sbjct 81 TGCTAATTTCAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATC 140 Query 197 GGTGCCCAAAAGTCAGACCCATTGGCTGATACTCTTCCCCGAAAACATCAACAA-A-GAA 254 ||||||||||| ||||| |||||||||||| |||||||| ||| ||| |||||| | ||| Sbjct 141 GGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGACAACAACAACAAGAA 200 Query 255 -AA-A-T-CTTGCAAGTTGTTCAATCCCGAGGAAAAAGACAAACTTTACAAGACGCAAGA 310 || | | | |||| ||||||||||||||| |||||||||||||||||||| |||||| | Sbjct 201 CAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTTACAAAACGCAACA 260 Query 311 TCTTGGTTTGGAATTTGGAAGGAGTCTTTGTATAGCAACCTATGGAAGTTGGCTTCTTA- 369 ||||| | |||||||| || |||| |||||| |||||||||||||||||| ||| || Sbjct 261 TCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAAGTTGG-TTCCTAA 319 Query 370 TGCAAGATTCAAAGTATACTGACAATAGTCTATACATTGTGAATCTATTCACCCGCGAGA 429 || |||| | || | | | | | |||||| || ||||||| || |||||||||| Sbjct 320 TGGTAGATCCTCTGT-T--T-A-A-TC-TCTATAT-TT-TGAATCTCTTTACCCGCGAGA 370 Query 430 GAATCAATCTTCCTCCTGTGGAGT 453 |||||||||| | ||| ||||||| Sbjct 371 GAATCAATCTACATCCCGTGGAGT 394 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58835038740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5