BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945930
Length=302
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22115.1 | Symbols: SCRL14 | SCR-like 14 | chr4:11714743-117... 375 9e-104
> AT4G22115.1 | Symbols: SCRL14 | SCR-like 14 | chr4:11714743-11715167
REVERSE LENGTH=261
Length=261
Score = 375 bits (203), Expect = 9e-104
Identities = 242/261 (93%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 21 ATGAGATCTGCTACTTTGTTGTTGGTTTCTTGTGTTCTTATGTCTTTCATTTTGGGCCAT 80
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1 ATGAGATCTGCTACTTTATTGTTGGTTTCTTGTGTTCTTTTGTCTTTCATTTTGGGCAAT 60
Query 81 GTTAAAGAAGTGGAAGCTGCGTTGAATCCAATGGACCAATGTGGCCGGAAGGATATATTT 140
||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 GTTAAAGAAGTGGAAGCTGTGTTGAAGCCAATGGACCAATGCGGCCGGAAGGATATATTT 120
Query 141 TTGGGAGGATGCGGCGGCAACGGAAACAAAACATGCATAAACGACTTTGTTAAGAAAGGA 200
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TTGGGAGGATGCGGCAGCAACGGAAGCAAAACATGCATAAACGACTTTGTTAAGAAAGGA 180
Query 201 GGTGCAAGCAA-TAAACCTAGTAGTTGCGAGTGTGATAACTTTGGCGAAGAACATTTATG 259
|||| | || ||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 181 GGTGTA-GCCGCTAAGCCTAGTAGTTGCGAGTGTGATGACTTTGGGGAAGAACATTTATG 239
Query 260 CCGATGTTATTTTCCTTGCTA 280
|||||||| ||||||||||
Sbjct 240 TAGATGTTATGTTCCTTGCTA 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13974434222
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5