BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945932
Length=305
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22105.1 | Symbols: SCRL26 | SCR-like 26 | chr4:11710218-117... 383 6e-106
> AT4G22105.1 | Symbols: SCRL26 | SCR-like 26 | chr4:11710218-11710608
REVERSE LENGTH=264
Length=264
Score = 383 bits (207), Expect = 6e-106
Identities = 247/266 (93%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 21 ATGAGATCTACTACTTTAGTT-TTGGTTTCTTGTGTTTTCATGTCTTTCATTTTGACCCA 79
||||||||| ||||||| || |||||||| |||||| ||||||||||| |||||| |||
Sbjct 1 ATGAGATCTGCTACTTT-TTTCTTGGTTTCCTGTGTTCTCATGTCTTTCGTTTTGAGCCA 59
Query 80 TGTGAAAGAAGTGGAAGCTGGATTTGATCCCATGGCGGCTAACCTACGCGTCCGGAAGGA 139
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 TGTTAAAGAAGTGGAAGCTGGATTGGATCCCATGGCGGCTAACCTACGCGTCCGGAAGGA 119
Query 140 TATATTTATCGGGGGATGCGGC-GGCGACGGAAACAAAACATGCATGAAAGACTTTGTTA 198
|||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 120 TATATTTATCGGAGGATGCGGCCGG-GACGGAAACAAGACATGCATGAAAGACTTTGTTA 178
Query 199 AGAAAGGAGGTGTGATGAATAAACCTATTAGTTGCGAGTGTGATGACTTTGGCTACGAAC 258
|||||||||||||||||||||| || |||||||||||||||||| || |||| |||||||
Sbjct 179 AGAAAGGAGGTGTGATGAATAAGCCCATTAGTTGCGAGTGTGATAACCTTGGATACGAAC 238
Query 259 ATTTATGCCGGTGTAATTTTTCTTGA 284
||||||||||||||||||||||||||
Sbjct 239 ATTTATGCCGGTGTAATTTTTCTTGA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14125237469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5