BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945944
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22030.1 | Symbols: | F-box family protein with a domain of... 1929 0.0
> AT4G22030.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11672396-11675575 FORWARD
LENGTH=1881
Length=1881
Score = 1929 bits (1044), Expect = 0.0
Identities = 1169/1230 (95%), Gaps = 5/1230 (0%)
Strand=Plus/Plus
Query 21 ATGGCTTCACTACAGGCTTCAAGACTTATGCTTACTACTTCTTGTTCTTCTTGCACAAGA 80
||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCATTACAGGCTTCAAGATTTATGCTTACTACTTCTTGTTCTTCTTGCACAAGA 60
Query 81 ACAAGATCCGCAGTTTCAATCCCTAAA-TTACGGAAATTTAATGTCGCAATCCCGCAAAT 139
|||||||||||| | |||||||| ||| |||| |||||||||||| | || ||||||||
Sbjct 61 ACAAGATCCGCAATCTCAATCCC-AAAGTTACCAAAATTTAATGTCTCGATTCCGCAAAT 119
Query 140 ACCGATCAAGAACCGGAATTTCAGAGTCGAGGAACCGAGTT-TTCGGTTGGATGGTTTTG 198
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||||
Sbjct 120 ACCGATCAAGAACCGGAATTTCAGAGTCGAAGAACCGA-TTCTTCGGTTGGATGGGTTTG 178
Query 199 CTGAAGATTTTGATCTTTCGCTGTTAGAGAAACAAAGGCAGAAGAAGAGAGGGTGCGATG 258
|||||||| ||||||||||| ||| ||||| ||||||||| |||||||||||||||||||
Sbjct 179 CTGAAGATCTTGATCTTTCGTTGTCAGAGAGACAAAGGCAAAAGAAGAGAGGGTGCGATG 238
Query 259 ATCAGGTTTTGCAAAGGTCGCGGCTCATGGCGGTTCTTGAAGAAGTTATAGATAGAGTAG 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 ATCAGGTTTTGCAAAGGTCGCGGCTCATGGCGGTTCTTGAAGAAGTTATAGATAGAGTGG 298
Query 319 AGATGCACAAGAACATTGGAGAGCAACGCAATAACTGGAACTCTCTCTTGCTCAATTCCG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGATGCACAAGAACATTGGAGAGCAACGCAATAACTGGAACTCTCTCTTGCTCAATTCCG 358
Query 379 TCAACATGATTACTCTCACTGCTGCTTTGATGGCCGGAATAGCTTCTATGAACGCCGGTG 438
|||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 359 TCAATATGATCACTCTCACTGCCGCTTTGATGGCCGGAATAGCCTCTATGAACGCCAGTG 418
Query 439 GAGTAGATTCCGTTTCCGCGGTGAGTATAGCCTCTACGGTGTTGCTTGCTTCTGCTACAG 498
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 419 GAATAGATTCCGTTTCCGCGGTGAGTATAGCTTCTACGGTGTTGCTGGCTTCTGCTACAG 478
Query 499 GTTTGGCTGCCTTGATGAACAAGATTCAGCCGTCACAGCTTGTGGAAGAGCAGAGGAACG 558
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 479 GTTTGGCTGCCTTGATGAACAAGATTCAGCCTTCACAGCTTGTGGAGGAGCAGAGGAACG 538
Query 559 CGACGAGGTTGTTCAAGCAGCTAAGAAACAGAATCGAGATGGTTCTGAGGGAGAAAAGTG 618
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAACGAGGCTGTTCAAGCAGCTAAGAAACAGAATCGAGATGGTTCTGAGGGAGAAAAGTG 598
Query 619 AAGATGGAATCAGTGAAGCAGACGTGAAAGAAGCTATAAAGAGAGTACTCTGTTTAGACA 678
|||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 599 AAGATGGAATCAGTGAAGAAGACGTGAAAGAAGCGATAAAGAGAGTGCTCTGTTTGGACA 658
Query 679 AAGCTTATCCACTTCCTCTAGTCGGCACCATGCTCGAGAAGTTCCCTCAAGAATTCAAGC 738
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGCTTACCCACTTCCTCTAGTTGGCACCATGCTCGAGAAGTTCCCTCAAGAATTCAAGC 718
Query 739 CAGCGACTTGGTGGCCCGAAACAAAACCCGAATCCACTCATTCCAGAGCCGAAGCTAACG 798
|||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 719 CAGCGACTTGGTGGCCTGAAACAAAACCCGAACCCACTCATTCCAGAACGGAAGCTAACG 778
Query 799 GGTGGAACTCGGAGCTagagatggagatgagagaggtggttgaggttattaagagtagag 858
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 GGTGGAACTCGGAGCTAGAGATGGAGATGAGAGAGGTGGTTGAGGTAATTAAGAGTAGAG 838
Query 859 atgcagaggagtacgagaAATTAGGTAACGTGGCATTGAAGTTAAACCGGGTTTTGGCAA 918
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 839 ATGCAGAGGAGTACGAGAAGTTAGGTAACGTGGCCTTGAAGTTAAACCGGGTTTTGGCAA 898
Query 919 TCTCTGGACCGGTGTTAACCGGAATCGCTGCTGTAAGTTCCGGTTTTATAGGGCACGGTT 978
|||||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 899 TCTCTGGACCAGTGTTGACCGGAATTGCTGCCGTAAGTTCCGGTTTTATAGGTCACGGTT 958
Query 979 CAGGTTTAGCTGGAGTAGTAGCAACAACGTGTGCTTCATTGGCTGCCGTAATGAACACGT 1038
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 CAGGTTTAGCTGGAGTAGTAGCAACAACGTGTGCTTCATTGGCTGCCGTAGTGAACACGT 1018
Query 1039 TAGAGCACGGAGGTCAAGTAGGGATGGTGTTTGAGATGTATAGAAACTCCGCCGGATTCT 1098
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1019 TAGAGCACGGAGGTCAAGTAGGGATGGTGGTTGAGATGTATAGAAACTCCGCCGGATTCT 1078
Query 1099 TCTCTCTTTTGGAAGATACGATCAAAACAGAGAGAAGAGAGAATGGACAAGTTTTCGAGA 1158
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 TCTCTCTTATGGAAGATACGATCAAAACAGAGAGACGAGAGAATGGACAAGTTTTCGAGA 1138
Query 1159 CCAAAGTAGCGTTGAAACTTGGGAGAAGCTTGTCTGAATTGAGAGATCTCGCCAGAAGAT 1218
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 CCAAAGTAGCGTTGAAACTTGGGAGAAGCTTGTCTGAATTGAGAGATCTGGCCAGAAGAT 1198
Query 1219 CTAGCTTGTCTAGGTTACAAGGATCA-GCT 1247
|||||||||||||||| | |||||| |||
Sbjct 1199 CTAGCTTGTCTAGGTTTGATGGATCAAGCT 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5