BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945946
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22010.1 | Symbols: sks4 | SKU5 similar 4 | chr4:11663324-1... 2756 0.0
> AT4G22010.1 | Symbols: sks4 | SKU5 similar 4 | chr4:11663324-11666715
FORWARD LENGTH=1983
Length=1983
Score = 2756 bits (1492), Expect = 0.0
Identities = 1598/1651 (97%), Gaps = 0/1651 (0%)
Strand=Plus/Plus
Query 16 aaaaaaTGAGAGGTTCTTGCAAAGTCTCTATAGTTCTTCTTCTGGTTTTAATCAATGGTG 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 AAAAAATGAGAGGTTCTTGCAAAGTCTCTATAGTTCTTCTTCTGGTTTTAATCAATGGTG 160
Query 76 TGCTTGGAGATAACCCTTATAGATTCTTTACCTGGAAAATAACTTATGGTGACATTTATC 135
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 161 TGCTTGGAGATAACCCTTATAGATTCTTCACCTGGAAAATTACTTATGGCGACATTTATC 220
Query 136 CCCTTGGTGTTAAACAACAGGGAATATTGATAAATGGGCAGTTTCCTGGACCTCACATTG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CCCTTGGTGTTAAACAACAGGGAATATTGATAAATGGGCAGTTTCCTGGACCTCACATTG 280
Query 196 ACGCAATCACAAATGATAATATCATTATTAGTGTTTTCAATTACTTGAAAGAGCCTTTCC 255
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 281 ACGCAATCACAAATGATAATATCATTATCAGTGTTTTCAATTACTTGAAAGAGCCTTTTC 340
Query 256 TCATTTCTTGGAACGGAGTGCAACAGAGGAAGAACTCATGGCAAGATGGAGTCGTAGGGA 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TCATTTCTTGGAACGGAGTGCAACAGAGGAAGAACTCATGGCAAGATGGAGTCGTAGGGA 400
Query 316 CAACATGTCCAATTCCACCTGGCAAAAACTTCACTTATGTAATCCAAGTCAAAGATCAAA 375
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 401 CAACATGTCCGATTCCACCAGGCAAAAACTTCACTTATGTAATTCAAGTCAAAGATCAAA 460
Query 376 TTGGTAGCTTCTACTATTTCCCTTCTCTTGCCTTCCACAAAGCCGCTGGTGCATTTGGAG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TTGGTAGCTTCTACTATTTCCCTTCTCTTGCCTTCCACAAAGCCGCTGGTGCATTTGGAG 520
Query 436 CCATCCGTGTTTGGAGTCGTCCTCGCATCCCCGTCCCGTTCTCTCCCCCTGACGGTGACT 495
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 521 CCATCCGTGTCTGGAGTCGTCCTCGCATCCCTGTCCCGTTCTCTCCCCCTGACGGTGATT 580
Query 496 TCTGGCTTCTCGCCGGAGATTGGTACAAAACCAATCACTATGTTTTGAGACGTCTACTAG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TCTGGCTTCTCGCCGGAGATTGGTACAAAACCAATCACTATGTTTTGAGACGTCTACTAG 640
Query 556 AAGCCGGAAGGAATCTACCGAATCCTGATGGAGTTCTCATCAATGGTCGAGGCTGGGGAG 615
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 641 AAGCCGGAAGGAATCTACCGAATCCTGATGGAGTTCTCATCAATGGTCGCGGCTGGGGAG 700
Query 616 GCAATACCTTCACCGTTCAACCTGGTAAGACATATAGATTTAGAATATCAAACGTCGGGG 675
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct 701 GCAATACCTTCACCGTTCAACCCGGTAAGACCTATAGATTCAGAATATCAAACGTTGGGG 760
Query 676 TCGCGACTTCATTAAACTTCAGAATCCAAGGACACACGATGAAGCTCGTTGAAGTAGAAG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TCGCGACTTCATTAAACTTCAGAATCCAAGGACACACGATGAAGCTCGTTGAAGTAGAAG 820
Query 736 GGTCTCACACTGTTCAAAACATCTACACTTCACTTGACATTCATTTAGGACAGTCTTACT 795
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GCTCTCACACTGTTCAAAACATCTACACTTCACTTGACATTCATTTAGGACAGTCTTACT 880
Query 796 CTGTTCTCGTGACGGCTAACCAAGCGCCTCAAGACTATTACATCGTCATCTCCTCGAGGT 855
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 881 CTGTTCTTGTGACGGCTAACCAAGCTCCTCAAGACTATTACATCGTCATCTCCTCGAGGT 940
Query 856 TCACGCGAAAAGTCCTCACAACGACTTCGATTCTCCATTACAGTAACTCGAGAAGAGGCG 915
||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 941 TCACGCGGAAAGTCCTTACAACGACTTCGATTCTCCATTACAGTAACTCGAGAAAAGGCG 1000
Query 916 TCTCTGGCCCTGTTCCAAATGGTCCCACTTTGGACATCGCATCTTCGCTCTACCAAGCTC 975
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1001 TATCTGGCCCTGTTCCAAATGGTCCTACTTTGGACATCGCATCTTCACTCTACCAAGCTC 1060
Query 976 GAACTATACGGAGGAATCTTACCGCGAGTGGTCCGAGACCAAACCCGCAAGGCTCGTATC 1035
||||||| ||||| |||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1061 GAACTATCCGGAGAAATCTTACAGCGAGTGGTCCGAGACCGAATCCGCAAGGCTCGTATC 1120
Query 1036 ATTACGGTTTGATTAAACCAGGCCGTACGATCATACTGGCCAACTCGGCTCCTTGGATCA 1095
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1121 ATTACGGTTTGATCAAACCAGGCCGTACGATCATACTCGCCAACTCAGCTCCTTGGATCA 1180
Query 1096 ACGGCAAGCAACGGTTCGCCGTGAACGGTGCCTCGTTTGTTGCGCCTGACACACCATTGA 1155
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 ACGGCAAGCAAAGGTACGCCGTGAACGGTGCCTCGTTTGTTGCGCCTGACACACCATTGA 1240
Query 1156 AGCTCGCCGATTACTTCAAGATTCCCGGAGTTTTTAACCTTGGAAGCATCCCAACGAGTC 1215
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1241 AGCTCGCCGATTACTTCAAGATTCCCGGAGTTTTTAACCTCGGAAGCATCCCAACGAGTC 1300
Query 1216 CTTCTGGTGGAAACGGAGGGTACCTTCAAAGCTCTGTTATGGCCGCTAACTTCAGAGAAT 1275
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1301 CCTCTGGTGGAAACGGAGGGTATCTTCAAAGCTCTGTTATGGCCGCTAACTTTAGAGAAT 1360
Query 1276 TCATCGAGGTTGTTTTCCAAAACTGGGAAAATTCAGTCCAGTCTTGGCACGTCTCCGGTT 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TCATCGAGGTTGTTTTCCAAAACTGGGAAAATTCAGTCCAGTCTTGGCACGTCTCCGGTT 1420
Query 1336 ACTCTTTCTTCGTCGTCGGAATGGATGGAGGACAATGGACACCCGGAAGCCGATCAAAGT 1395
||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 1421 ACTCTTTCTTCGTCGTCGGTATGGATGGAGGACAATGGACTCCCGGAAGCCGAGCAAAGT 1480
Query 1396 ACAACCTGCGGGATGCGGTTTCACGGTCCACCGTTCAAGTATATCCGAGGGCATGGACAG 1455
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ACAACCTGCGGGACGCGGTTTCACGGTCCACCGTTCAAGTATATCCGAGGGCATGGACAG 1540
Query 1456 CGATCTACATAGCATTGGATAATGTGGGGATGTGGAACATAAGGTCGGAGAATTGGGCAA 1515
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1541 CGATCTACATAGCGTTGGATAATGTTGGGATGTGGAACATAAGGTCGGAGAATTGGGCAA 1600
Query 1516 GACAGTATTTAGGGCAACAATTCTATCTCCGAGTTTACACTTCCTCTACTTCGTACAGAG 1575
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1601 GACAGTATTTGGGGCAACAATTCTATCTTCGAGTTTACACTTCCTCTACTTCGTACCGAG 1660
Query 1576 ATGAGTATCCACCACCAAAGAACGCTCTTATGTGCGGACTAGCTAGAGGCCGCCACACCA 1635
|||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1661 ATGAATATCCACCACCAAAGAACGCTCTTATGTGCGGACGAGCTAAAGGCCGCCACACTA 1720
Query 1636 GGCCATTCTAAAAGGGATATTGGACGCGACG 1666
||||||||||||||||||||||||||| |||
Sbjct 1721 GGCCATTCTAAAAGGGATATTGGACGCAACG 1751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5