BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945959
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19220.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 267 5e-71
> AT4G19220.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=2799
Length=2799
Score = 267 bits (144), Expect = 5e-71
Identities = 191/212 (90%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 22 CAT-GAATGGGAGAGAAAGCAATGGAGCTATTCAAGGAAATGATATAAGTAGTGGTAACT 80
||| ||||||||||||| ||||||||||||||||||||| || |||| ||||||
Sbjct 2272 CATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAACTG-----AGTA---GTAACT 2323
Query 81 CAGGGATGGAACCAAACAAGAGCACTTTCATAAGCCTATTGTCAGCTTGCAGCCACTCTG 140
||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2324 CAGAGATGGAACCAAACAAGAGCAGTTTCATAAGCCTGTTGTCAGCTTGCAGCCACTCTG 2383
Query 141 GGTTTATAGATGAAGGTCTAAGATATTACAACCAAATGGAGGAAAAATTTGGGGTTAAAC 200
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2384 GGTTTATTGATGAAGGTCTAAGTTATTACAAGCAAATGGAGGAAAAATTTGGGGTTAAAC 2443
Query 201 CAGTTACCGAGCATCGTGTTTGTATCTGTTGA 232
||||||| |||||||| ||||| || ||||||
Sbjct 2444 CAGTTACTGAGCATCGGGTTTGGAT-TGTTGA 2474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5