BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945974

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21902.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   337    4e-92


> AT4G21902.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G04745.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr4:11619786-11620139 FORWARD LENGTH=354
Length=354

 Score =  337 bits (182),  Expect = 4e-92
 Identities = 219/237 (92%), Gaps = 2/237 (1%)
 Strand=Plus/Plus

Query  21   ATGGCAATGAT-AATGAATCCAAAACAATACTCAAAGATTGAGAAAGAAGATCCTAATGA  79
            ||||||||||| || ||||||||| |||||| ||||||| ||||||||||||| ||||||
Sbjct  1    ATGGCAATGATGAA-GAATCCAAACCAATACACAAAGATAGAGAAAGAAGATCTTAATGA  59

Query  80   GATAATCCATAAGAGAGCGCAGTTTCTGATCCACAAGATTCTCCAACGAGCCGACACAGA  139
            ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  60   GATCATCCATAGGAGAGCTCAGTTTCTGATCCACAAGATTCTCCAACGAGCCGACATAGA  119

Query  140  GACATTAAGACAGCGACAGAAGAGAAATACCATGATCAAAACGTTGTCATTTAGAGTGGT  199
            |||||||||||||| ||||||||||||||||| |||||||  ||| || |||||||||||
Sbjct  120  GACATTAAGACAGCAACAGAAGAGAAATACCACGATCAAATTGTTTTCGTTTAGAGTGGT  179

Query  200  CGGGATAAGAATGAAGATAGGGAAGAAGCTGAGGAAGCTAAGAAAGAGTTGTGTAAT  256
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  180  TGGGATAAGAATGAAGATAGGGAAGAAGCTGAGGAAGCTAAGGAAGAGTTGTGTAAT  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12918811493


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5