BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945987
Length=475
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21830.1 | Symbols: ATMSRB7, MSRB7 | methionine sulfoxide re... 431 3e-120
> AT4G21830.1 | Symbols: ATMSRB7, MSRB7 | methionine sulfoxide
reductase B7 | chr4:11584346-11585419 REVERSE LENGTH=817
Length=817
Score = 431 bits (233), Expect = 3e-120
Identities = 374/440 (85%), Gaps = 17/440 (4%)
Strand=Plus/Plus
Query 24 GCAATGACCGCGACAGCAGAAGCTCCACCTACTAAATCTTTCCAGAAACAAGACGAGGAG 83
|||||||||||| |||| || |||| | ||| |||||||||||||||||||||||||
Sbjct 170 GCAATGACCGCG---GCAGCAGTTCCAGCAACTGGATCTTTCCAGAAACAAGACGAGGAG 226
Query 84 TGGCGTGCGATTCTGTCTCCTGAGCAGTTTAGGATTCTCAGACAAAAAGGAATAGAGCAA 143
||||||||| ||||||||||||||||||||||| ||||||||| |||||| | ||| ||
Sbjct 227 TGGCGTGCGGTTCTGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAA 286
Query 144 CGAGGCACTGGAGAGTATACCAA-ATTGTTCGAGGAAGGGACTTACT-GTTGTTCTGGTT 201
||||||| ||||||| ||| || | |||||||||||||||||| | ||||| ||||||
Sbjct 287 CGAGGCAAAGGAGAGTTTACAAAGAA-GTTCGAGGAAGGGACTTA-TAGTTGTGCTGGTT 344
Query 202 GTGGTACTGCTGTTTACAAATCCACCACAAAGTTTGATTCCGGTTGCGGCTGGCC-GTCA 260
|||| |||||| |||| ||||| ||||| ||||| || ||||||||||| ||||| | |
Sbjct 345 GTGGAACTGCTCTTTATAAATCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTG-CG 403
Query 261 TTCTTCGACGCCATTCCCGGTGCTATTAACCAAACTCCAGAAGAAGGT--AAGAATAGAC 318
|||||||||||||| |||||||||||||| ||||||||||||| |||| ||||| | |
Sbjct 404 TTCTTCGACGCCATCCCCGGTGCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGA-A- 461
Query 319 TGGAGATCACATGTGCAGTATGTGATGGACATCTT-GGACATGTTCTCAAAGGAGAAGGT 377
||||||| ||||||||||| |||||||||||| || || |||||| ||||||| ||||||
Sbjct 462 TGGAGATAACATGTGCAGTGTGTGATGGACAT-TTAGGCCATGTTTTCAAAGGCGAAGGT 520
Query 378 TTCCCAAATCCTACGGA-CGAGCGTCATTGCGTTAACAGTGTCTCTCTCAAATTCTCTTC 436
| | | | ||| || || | | ||||| ||||||||||||||||||||||||||||||||
Sbjct 521 TACTCTACTCCAACCGATCAA-CGTCACTGCGTTAACAGTGTCTCTCTCAAATTCTCTTC 579
Query 437 TACAGATTCCTCCAAATAAT 456
| | | ||||||| ||||||
Sbjct 580 TGCTGGTTCCTCCCAATAAT 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22605366150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5