BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946000

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21740.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   697    0.0  


> AT4G21740.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G30515.1); 
Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11545926-11546434 
FORWARD LENGTH=509
Length=509

 Score =  697 bits (377),  Expect = 0.0
 Identities = 447/479 (93%), Gaps = 11/479 (2%)
 Strand=Plus/Plus

Query  31   ATGGCTCATCTCTTAAACCGCGTTAGATCTTCCTCTTCGTCGGTCTTCCCATTCACTATA  90
            ||||||||||||||||||||||||||||||||||  |||||| |||| ||||| ||||||
Sbjct  1    ATGGCTCATCTCTTAAACCGCGTTAGATCTTCCTGGTCGTCGATCTTACCATTAACTATA  60

Query  91   ACATTCCTCGCTC-TCTTCACCGGAAACTCACTGGCCGGAGAATTACGTCCTTCCGATCA  149
            |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  61   ACATTCCTCG-TCATCTTCACCGGAAACTCACTCGCCGGAGAATTACGTCCTTCCGATCA  119

Query  150  TGGCTTACAGTATCAATTCAGCTCACCACCGACTGAATCTCACTCACCTCCGGGAAAAAT  209
            |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  120  TGGCTTACAGTACCAATTCAGCTCACCACCGACAGAATCTCACTCACCTCCGGGAAAAAT  179

Query  210  GAAGTCCTTCTTCGGAGATTCTCA---TTCTTCTCCTCCTCCTTCTCACTCTCAGCTCCT  266
            |||||||||||| |||||||||||   |||||||||||||||||||||| ||||||||||
Sbjct  180  GAAGTCCTTCTTTGGAGATTCTCATTCTTCTTCTCCTCCTCCTTCTCACCCTCAGCTCCT  239

Query  267  TCCTAAAGCCACCGCGGCAGACGGCGGAGACGACGATTCTTGGTGGCGAGACGGGGCT-G  325
             ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct  240  CCCTAAAGCCACGGCGGCAGACGGCGGAGACGACGATTCTTGGTGGCGAGATGGAGCTGG  299

Query  326  GTTACAGACGTGATCACGTGATGAGGCACGTGTTTCTTGCGGCGAGTATCATCTGCGGCG  385
            | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GAT-CAGACGTGATCACGTGATGAGGCACGTGTTTCTTGCGGCGAGTATCATCTGCGGCG  358

Query  386  TCTCCGGCGTTGCGCTTCTGGTGGTTTTTACTTTGATTTATTTCTTTAGGTATCGGAAAC  445
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  359  TCTCCGGCGTTGCGCTTCTGGTGGTTTTTACTTTGATTTACTTCTTTAGGTATCGTAAAC  418

Query  446  ATAACCATTCGAACTCACCC---GGTAACGATTCAAAAGAAATTCGATTTTGATT-TTG  500
            |||| |||||||||||||||   ||||||||||| |||||||||  ||||||||| |||
Sbjct  419  ATAATCATTCGAACTCACCCACCGGTAACGATTCTAAAGAAATTATATTTTGATTATTG  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24715200324


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5