BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946002

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21720.1 | Symbols:  | unknown protein; Has 2692 Blast hits ...   741    0.0  


> AT4G21720.1 | Symbols:  | unknown protein; Has 2692 Blast hits 
to 975 proteins in 186 species: Archae - 4; Bacteria - 460; 
Metazoa - 658; Fungi - 93; Plants - 1089; Viruses - 100; Other 
Eukaryotes - 288 (source: NCBI BLink). | chr4:11542490-11544608 
FORWARD LENGTH=825
Length=825

 Score =  741 bits (401),  Expect = 0.0
 Identities = 430/444 (97%), Gaps = 2/444 (0%)
 Strand=Plus/Plus

Query  21   GAGATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGCATAAGTATTCA  80
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct  69   GAGATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGAATAAGTACTCA  128

Query  81   GCTTTTACGCAGCTTCCATGGAGAGTGTTCTGCAAAAAGGGATGTGATGCCGATAGTGAC  140
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  129  GCATTTACGCAGCTTCCATGGAGAGTATTCTGCAAAAAGGGATGTGATGCCGATAGTGAC  188

Query  141  TCATGGGAAGATTGTGTAGGAGACTGCAGTGAAATATGCTACAAAGATCCTGTGCTAAAA  200
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  189  TCATGGGAAGATTGTGTAGGAGACTGCAGTGAAATTTGCTACAAAGATCCTGTGCTAAAA  248

Query  201  GACAGACCATGGACTGCAGTTATAGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAA  260
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  249  GACAGACCATGGACTGCTGTTATAGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAA  308

Query  261  TGCTTTCACGCATGTGTAGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTC  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  309  TGCTTTCACGCATGTGTAGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTC  368

Query  321  AATAAGGTGAAACCAAAGAGACCTccaccaccaccgccaaagccacaaccaccaccacca  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  AATAAGGTGAAACCAAAGAGACCTCCACCACCACCGCCAAAGCCACAACCACCACCACCA  428

Query  381  ccaccacAGT-CTCAAAAACCAATGCAGCCTCCTACTGAGGATGTTCCTGCAACTTCCGC  439
            ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  429  CCACCAC-GTTCTCAAAAACCAATGCAGCCTCCTACTGAGGATGTTCTTGCAACTTCCGC  487

Query  440  TTAACATTTCACATCCCCCATCAA  463
            || || | || || ||||||||||
Sbjct  488  TTGACGTATCTCAACCCCCATCAA  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5