BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946011

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10290.1 | Symbols: ADL6, DRP2A | dynamin-like protein 6 | c...   167    5e-41
  AT3G21820.1 | Symbols: ATXR2, SDG36 | histone-lysine N-methyltr...   113    6e-25


> AT1G10290.1 | Symbols: ADL6, DRP2A | dynamin-like protein 6 | 
chr1:3370558-3377463 FORWARD LENGTH=3304
Length=3304

 Score =  167 bits (90),  Expect = 5e-41
 Identities = 115/127 (91%), Gaps = 2/127 (2%)
 Strand=Plus/Plus

Query  67    AAGAGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTACAGAGAAAGGGT  126
             ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1386  AAG-GGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTCCAGAGAAAGGGT  1444

Query  127   TCAGATCGTTGATAAAGATTGTCATTGAGTTGGCTAAAGATCCTCCACGTCTCA-TGTTC  185
             | ||||||||||||||||||||| |||||||||||||||| ||  |||| ||   |||| 
Sbjct  1445  TGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCACGCCTTTGTGTTG  1504

Query  186   ATGAGGT  192
             |||||||
Sbjct  1505  ATGAGGT  1511


> AT3G21820.1 | Symbols: ATXR2, SDG36 | histone-lysine N-methyltransferase 
ATXR2 | chr3:7688434-7691504 REVERSE LENGTH=1677
Length=1677

 Score =  113 bits (61),  Expect = 6e-25
 Identities = 67/70 (96%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  3     TTCTTCCCTCTGCAGAGCTGTATGAACCATTCTTGTTGCCCTAATGCCAAATCCTTCAAA  62
             |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  1240  TTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCCTAATGCAAAAGCCTTCAAA  1299

Query  63    AGAGAAGAGG  72
             ||||||||||
Sbjct  1300  AGAGAAGAGG  1309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10606495039


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5