BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946012

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)...   134    7e-31


> AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) 
family protein | chr1:4348498-4350867 FORWARD LENGTH=1812
Length=1812

 Score =  134 bits (72),  Expect = 7e-31
 Identities = 88/96 (92%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  3    GTGCGAGTAGCGGACGTGTGATGAGGGAGCCGTCTATGCTTGTGAGGGAGGCTGCGGCGG  62
            |||| ||||||||||| |||||| | ||||| |||||||||||||| || || |||||||
Sbjct  424  GTGCTAGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGG  483

Query  63   AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATT  98
            ||||||||||||||||||||||||||||||||||||
Sbjct  484  AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATT  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5