BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946013

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21820.1 | Symbols: ATXR2, SDG36 | histone-lysine N-methyltr...   207    4e-53


> AT3G21820.1 | Symbols: ATXR2, SDG36 | histone-lysine N-methyltransferase 
ATXR2 | chr3:7688434-7691504 REVERSE LENGTH=1677
Length=1677

 Score =  207 bits (112),  Expect = 4e-53
 Identities = 144/160 (90%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  77   GAAACAGATTAAGCCAAAGCAGTCGCTACACTTGGAGGCATGGAAACCAGTATCGATTGG  136
            |||||||| | |||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct  828  GAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGG  887

Query  137  ATACAAAAGAAGGTGGTGGGACTGCATCGCATTGCCAGATGATGTTCATCCTTTTGATGA  196
            ||||||||||||||||||||||||||| |||||||||||||||||| |||||  ||||||
Sbjct  888  ATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGA  947

Query  197  AGGAGCGTTGAGGATGGAGATTAAGAATTTTGCGTGTACG  236
            |||||| || |||||| | || |||||  |||||||||||
Sbjct  948  AGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACG  987


 Score =  117 bits (63),  Expect = 7e-26
 Identities = 69/72 (96%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  236   GGAAGAAGCCGAGGAAATCACGAGACTGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA  295
             ||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct  1161  GGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA  1220

Query  296   CTGTTGCCAAGG  307
             ||||||||||||
Sbjct  1221  CTGTTGCCAAGG  1232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5