BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946030
Length=2251
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21550.1 | Symbols: VAL3 | VP1/ABI3-like 3 | chr4:11463104-1... 1701 0.0
> AT4G21550.1 | Symbols: VAL3 | VP1/ABI3-like 3 | chr4:11463104-11468679
FORWARD LENGTH=2335
Length=2335
Score = 1701 bits (921), Expect = 0.0
Identities = 1152/1256 (92%), Gaps = 45/1256 (4%)
Strand=Plus/Plus
Query 5 GCTTTCGTCTTCTTCCATGTCATCCTCTTCGTTTTCTGCTAGATTTTGCTTCAACCACGA 64
|||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 3 GCTTTCCTCTTCATCCATGTCATCGTCTTCGTTATCTGCTAGATTTTGCTTCAACCACGA 62
Query 65 ATGTTTTGAGTTTAAGCTCGACCATTGCCGTCCTGGTTGGCGTCTCCGTTCTGGCGATTT 124
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ATGTTTTGAGTTCAAACTCGACCATTGCCGTCCTGGTTGGCGTCTCCGTTCTGGCGATTT 122
Query 125 CGTCGACCTCTGTGATCGTTGCGCCTCTGCTTATGAGCAAGGACAGTTTTGTGACGTATT 184
|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 123 CGTCGACCTCTGTGATCGTTGCGCCTCTGCGTATGAACAAGGAAAGTTTTGTGACGTATT 182
Query 185 TCACCAAAGGGCTTCCGGATGGAGGTGTTGTGAGTCATGTGGAAAGCATTTCGTGCAGCG 244
||||||||||||||| |||||||||||||||||||||||||| | | ||||
Sbjct 183 TCACCAAAGGGCTTCTGGATGGAGGTGTTGTGAGTCATGTGG--A--A--------AGCG 230
Query 245 AATTCATTGTGGATGTATTGTTTCTGCATCTGCTTTTACGTTACTGGATGCTGGAGGAAT 304
|||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||
Sbjct 231 AATTCATTGTGGATGTATTGCGTCTGCTTCTGCTTATACGTTAATGGATGCTGGAGGAAT 290
Query 305 TGAGTGTTTGGCTTGCGCAAGaaaaaaaG-TTGCTTTGGGATCCACTTTTTCGCCATCAC 363
||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||
Sbjct 291 TGAGTGTTTGGCTTGCGCAAG-AAAAAAGTTTGCTTTGGGACCCAATTTTTCGCCATCAC 349
Query 364 CGTCCTTTCTTTTCCAATCTCCAATTTCTGAGAAATTCAACGACTTGTCGATCAACTGGA 423
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 350 CGTCCTTTCTTTTCCAGTCTCCAATTTCTGAGAAATTCAAGGACTTGTCGATCAACTGGA 409
Query 424 GTTCCTCAACTAGGTCAAATCAGATAAGCTACCAGCCTCCTAGTTATTTAGGTCCTTCAG 483
|||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 410 GTTCTTCAACTAGATCAAATCAGATAAGCTACCAGCCTCCTAGTTGTTTAGATCCTTCAG 469
Query 484 CTCTGCAGTTTGATTCGCGTAATCGTGGAGGTAATAATGAGTTTAGTCAACCTACTTCTA 543
|||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 470 TTCTGCAGTTTGATTTTCGTAATCGTGGAGGTAATAATGAATTTAGTCAACCTGCTTCTA 529
Query 544 AAGACAGGGCCACTGCATGTCCCATGG-GCaaaaaaaGGGGAATGAATGACATGATAGGG 602
|||| |||| |||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 530 AAGAAAGGGTCACTGCATGTACCATGGAG-AAAAAAAGGGGAATGAATGACATGATAGGG 588
Query 603 AAACTAATGAGTGAAAACTCGAAACATTATAAAGTATCTCCTTTTCCAAATGTCAATGTA 662
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 589 AAATTAATGAGTGAAAACTCGAAACATTATAGAGTATCTCCTTTTCCAAATGTCAATGTA 648
Query 663 TATCACCCACTGATCTCAATAAAGGAGGGTCCATGTGGGACACAGCTTGCGTTTCCTGTG 722
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TATCACCCACTGATCTCACTAAAGGAGGGTCCATGTGGGACACAGCTTGCGTTTCCTGTG 708
Query 723 CCAATGACAACACCAATTGAGAAAACTGGTCACTCTAGACTAGATGGAAGTAATTTATGG 782
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CCAATTACAACACCAATTGAGAAAACTGGTCACTCTAGACTAGATGGAAGTAATTTATGG 768
Query 783 CATACACCTAATTCATCTCCACTAAGTCGCTTACACAATGACTTGAATGGTGGATCAGAC 842
|| |||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 769 CACACACGTAATTCTTCTCCGCTAAGTCGCTTACACAATGACTTGAATGGTGGAGCAGAC 828
Query 843 TCGCCATTCGAAAGCAAAAGTCGTAATGTGA-GGACTCATCTTGATACGCCAGGAAAATA 901
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 829 TCGCCATTCGAAAGCAAAAGTCGTAATGTGATGG-CTCATCTTGAGACGCCAGGAAAATA 887
Query 902 TCAGGTGGTTCCACGATATTGGCCCAAGGTTTCATATAAAAACCAAGTTCTGCAGAATCA 961
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCAGGTGGTTCCACGATTTTGGCCCAAGGTTTCATATAAAAACCAAGTTCTGCAGAATCA 947
Query 962 ATCAAAAGAGTATCCTTCTTCTC-TTAT-AGATACTA-CATTG-GAATATAACTTTATGC 1017
||||||||| ||| | || | || | | | || | ||| ||| || | |
Sbjct 948 ATCAAAAGA--ATC-TGAATC-CGTTGTCAC-TCCTCTCTTTGAGAAGAT--C------C 994
Query 1018 TGAGTGCAAGTGATACTGGAATAGTTGGGCGAGTGGTGCTGCCAAAGAAATGTGCAGAGG 1077
||||||||| ||||||||||| || || | |||| ||||||||||||| ||||||||
Sbjct 995 TGAGTGCAACTGATACTGGAA-AGC-GG-C---TGGTCCTGCCAAAGAAATATGCAGAGG 1048
Query 1078 CTTTCTTGCCCCAACTTTCCCACACCCAAGGTGTGCCTCTCACAGTACAGGACCCAATGG 1137
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1049 CTTTCTTGCCCCAACTTTCCCACACCAAAGGTGTGCCTCTCACAGTACAGGACCCAATGG 1108
Query 1138 GTAAAGAGTGGACATTTCAGTTTCGCTTTTGGCCCAGCAGGAATAG-CAGAATATATGTT 1196
|||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1109 GTAAAGAGTGGAGATTTCAGTTTCGCTTTTGGCCCAGCAGCAA-AGGCAGAATATATGTT 1167
Query 1197 CTAGAGGGAGTAACTCCATGCATACAGAGCCT-GCAGTTGCAGGCTGGTGATACAG 1251
||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 1168 CTAGAGGGAGTAACTCCATTCATACAGA-CCTTGCAGTTGCAGGCTGGTGATACAG 1222
Score = 1332 bits (721), Expect = 0.0
Identities = 887/963 (92%), Gaps = 27/963 (3%)
Strand=Plus/Plus
Query 1295 AGTCATATTCAGTCGATTAGATCCAGAAAGGAAGTTAATTTTGGGATTCAGAAAGGCTTC 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 AGTCATATTCAGTCGATTAGATCCAGAAAGGAAGTTAATTTTGGGATTCAGAAAGGCTTC 1280
Query 1355 GGTTACTCGATCATCTGATCAGGCTGAAACGGCTGATATGCATTCACCATCTAAAGTTAA 1414
| |||||| ||| |||||||||||||| ||||||||||||||||||| | | |||||||
Sbjct 1281 GATTACTCAATCGTCTGATCAGGCTGATCCGGCTGATATGCATTCACCGTTTGAAGTTAA 1340
Query 1415 GAAGTCTGCTTATATAACTAACGAATCCCCAGGAGTAGAATGTTCCTCCGGTAAGAAGAA 1474
||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct 1341 GAAGTCTGCTTATATAACTAAAGAAACCCCAGGAGTAGAATGTTCCTCTGGTAAGAAGAA 1400
Query 1475 AAGCAGCATGATGATTACAAGAAGTAAACGTCAAAAAGTTGAAAAGGGAGACCACAACTT 1534
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1401 AAGCAGCATGATGATTACAAGAAGTAAACGTCAAAAAGTTGAAAAGGGAGACGACAACTT 1460
Query 1535 GCTGAAGCTAACATGGGAAGAAGCTCAAGGATTTCTCCTGCCTCCTCCCAACCTCACTCC 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GCTGAAGCTAACATGGGAAGAAGCTCAAGGATTTCTCCTGCCTCCTCCCAACCTCACTCC 1520
Query 1595 ATCCAGAGTTGTGATAGAGGATTATGAGTTTGAGGAGTATGAGGATGCTCCAATCATTGG 1654
||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1521 ATCTAGAGTTGTGATAGAGGATTACGAGTTTGAGGAGTATGAGGAGGCTCCAATCATCGG 1580
Query 1655 GAAACCTACTGATGCTGCAGGATCAACATGCACAGAAGTTGAAGGACTGTTGATATCACC 1714
||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1581 GAAGCCTACTGATGTTGCAGGATCAACGTGCACTGAAGTTGAAGGACTGTTGATATCACC 1640
Query 1715 CACAACCACAAAGCACCCACGACATAGAAATGGCTGCACTTGCATCGTTTGCATACAATC 1774
||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 1641 AACAACCACAAAGCACCCACGACATAGAGATGGCTGTACTTGCATCATTTGCATACAATC 1700
Query 1775 CCCAAGTGGGATAGGTCCTAAACACGACCGACGCTGTTCTTGTGCGGTCTGCGAAACTAA 1834
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 1701 CCCAAGTGGGATAGGTCCTAAACACGACCGATGCTGTTCTTGTGCAGTCTGCGACACTAA 1760
Query 1835 AAAACGCCGTAGGCGTTCTCTGTTGCTACGGAGGGAAAAGATGCAGATGGAGAAAGAAGA 1894
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1761 CAAACGCCGTAGGCGTTCCCTGTTGCTACGGAGGGAAAAGAAGCAGATGGAGAAAGAAGA 1820
Query 1895 CAATGCGCACAAGGAGCTCGAGCAACTGAACTCTGATAATGGACTTCACCAATCTGCTAA 1954
|||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1821 CAATGCGCGCAAGTTGCTCGAGCAACTGAATTCTGATAATGGACTTCACCAATCTGCTAA 1880
Query 1955 CAACAGTGAGAATCATGAGCGTCATGATTCGCCTGAGCGTCATGCTTCGCCTTTGAAAAG 2014
|||||||||||||||||||||||||| | | || || | ||||||| |
Sbjct 1881 CAACAGTGAGAATCATGAGCGTCATG---C---T-----TC--GC--C---TTTGAAA-G 1921
Query 2015 T-CAATTAGATTTGAACTTCAAACCAGAGAAAG-ACGAAGAATCTCTGCCTGGTTCTAAC 2072
| |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 1922 TTCAATTAGATTTGAACTTCAAACCAGA-AAAGGACGAAGAATCTCTCCCTGGTTCTAAC 1980
Query 2073 AAAACTACCGAGAACAAGACTTT-CCATCATAATGACACAGTGAATTCTAGCTTCAAGTC 2131
||||||||| ||| | ||||| | || |||| |||||||||| || |||||||||| |||
Sbjct 1981 AAAACTACCAAGAGCGAGACTCTGCC-TCATGATGACACAGTAAAGTCTAGCTTCACGTC 2039
Query 2132 ACCAAGCTCATCAAGTGCTCATAGCCAAAATAACAAGGAAGATGAAGGAAAACTCAGGAA 2191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2040 ACCAAGCTCATCAAGTGCTCATAGCCAAAATAACAAGGAAGATGAAGGAAAACTCAAGAC 2099
Query 2192 AAACACAGAAGTTGCAGACACCACTAC-A-A-GCTCCATGTAGATTTTGCAGACTCCTAT 2248
|| ||||||| ||||||||||||| || | | |||||||||||||||||||||||| |||
Sbjct 2100 AACCACAGAAATTGCAGACACCACCACCACAAGCTCCATGTAGATTTTGCAGACTCTTAT 2159
Query 2249 AGC 2251
|||
Sbjct 2160 AGC 2162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111696212625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5