BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946038
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 713 0.0
> AT4G21500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G05018.1); Has
20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0;
Other Eukaryotes - 3 (source: NCBI BLink). | chr4:11440936-11441734
REVERSE LENGTH=799
Length=799
Score = 713 bits (386), Expect = 0.0
Identities = 625/730 (86%), Gaps = 58/730 (8%)
Strand=Plus/Plus
Query 1 CTTCGAAACTCCATCACGCCATGGAAGGAGAAACTCTACAAGTC-TC--CTCCTTTAATT 57
||||||||| || |||||||||||||| |||||||||||||||| || || || | ||
Sbjct 3 CTTCGAAACACCGTCACGCCATGGAAGAAGAAACTCTACAAGTCTTCTTCTTCTCTCATC 62
Query 58 CTCTCTTCTCC-TGTTTCATCACTCTCTATAGTCTTATTCTTATCTATTTCCCTAATGAT 116
||||||||||| | |||||| |||||||| ||||| || || ||||||||||| ||||||
Sbjct 63 CTCTCTTCTCCAT-TTTCATAACTCTCTACAGTCTAATCCTCATCTATTTCCCCAATGAT 121
Query 117 TTGCTTCGAAtctttctctcccctgttcttctcatctccggagctcttctcctctctctt 176
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 122 TTGCTTCGAATCTTTCTCTCCCCTGTTCTTCTCATCTCCGGAGCTCTCCTTCTCTCTCTT 181
Query 177 ctccgcctcGGGTCGACCCGAGAATCTAACACCCGACCCGAGAAAAGCTACGAGATTCTC 236
||||| ||||| |||||||||||| ||||||||| |||||| ||||||||| |
Sbjct 182 CTCCGTCTCGGATCGACCCGAGAACCTAACACCCAACCCGATAAAAGCTAC--G------ 233
Query 237 AAGGAAG-CTGAAGAACCTAATGTTTTTCTGGTTCGTGATTCCGATTTGATGGGTGATTT 295
||| || ||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 234 -AGG-AGTCTGAAGAACCTAAGGTTTTTCTGGTTCGTGAATCCGATTTGATGGGTGGTTT 291
Query 296 TGTGGAATGGAACTTGAGAGCTCCATTGGAAGTGATTCACGAAGCCTACgaagaagaaga 355
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 292 TGTGGAATGGAACTTGAGAGCACCATTGGAAGTGATTCACGAAGCTTACGAAGATGAAGA 351
Query 356 agaagaGGATCCGAATGAAAAAGATCCGACCCGGTTTCGAAAAATTGAGAGATTCCCATC 415
||| || || ||| ||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 352 AGAGGAAGA--AGAA-GAAGAAGATCCGACCCGGTTTAGAAAAATGGAGAGATTCCCATC 408
Query 416 TTTGTCACTCTGTTA-CC-----C--A----GAATCGGATTCTGCCTCCTCGTCTGAATT 463
|||||||||||||| || | | |||||||||||||| |||||||| |||||
Sbjct 409 GTTGTCACTCTGTTACCCAGAATCAGATTCGGAATCGGATTCTGCTTCCTCGTCAGAATT 468
Query 464 CAATTTCCCGGAGATCGGTGACTGGAACTCAG-CGGAAAATATGGGATTCAGATGGGAAG 522
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 469 CAATTTCCCGGAAATCGGTGACTGGAACTC-GCCGGAAAATATGGGATTCAGATGGGAAG 527
Query 523 AGGAGGAGGACGACGGTGGAATTGGAGGCGAAGGTTTGATTGAGATAAAGCTCGATGAGT 582
| || | || | |||||||| ||| | ||||||||||||||||||||||||||| | |
Sbjct 528 A--AG-ACGA-G--GGTGGAATAGGATGTGAAGGTTTGATTGAGATAAAGCTCGATCA-T 580
Query 583 ATAATCATCGTAGCCATAATAGCAAGATGATGAATAAATGGAAACAAACAGAGATTGATT 642
|| | | | ||||||||| |||||||||| |||| | || ||||||||||
Sbjct 581 -TA-T-A--G---CCATAATAGGAAGATGATGAGTAAA---A--CA----GAGATTGATT 623
Query 643 TTCATGGAGAGGAAGATGGTTTGATCGAGATCGATCTTTTTCAATGAAGTAGAAGAAGAA 702
|||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 624 TTCATGCAGAGGAAGATGGTTTGATCGAGATCGATCTTTTTCCATGAAGAAGAAGAAGAT 683
Query 703 GATGAT-CTC 711
|||||| |||
Sbjct 684 GATGATTCTC 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5