BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946045

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55940.1 | Symbols: emb2731 | Uncharacterised protein family...   231    1e-60
  AT5G51620.2 | Symbols:  | Uncharacterised protein family (UPF01...   174    2e-43


> AT5G55940.1 | Symbols: emb2731 | Uncharacterised protein family 
(UPF0172) | chr5:22655998-22658048 REVERSE LENGTH=1039
Length=1039

 Score =  231 bits (125),  Expect = 1e-60
 Identities = 135/140 (96%), Gaps = 0/140 (0%)
 Strand=Plus/Minus

Query  69   CAAGAGAATTGGTGCCTGAGGAAAATAACGAGAAATGAGATCACCAATGTTTTTAGCCAC  128
            ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct  523  CAAGAGAATTGGTGCCTGAGGGAAATAGCGAGAAATGTGATCACCAATGTTTTTAGCCAC  464

Query  129  ACCACAGAGCTCAACATCATCAAACCTCTCGTTTGCATGAAAGTATCCAAGAATACTTAA  188
            ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  463  ACCACAGAGCTCAACGTCATCAAACCTCTCGTTTGCATGAAAGTATCCAACAATACTTAA  404

Query  189  ACCTTGAGCCACATAATGCT  208
            ||||||||||||||||||||
Sbjct  403  ACCTTGAGCCACATAATGCT  384


> AT5G51620.2 | Symbols:  | Uncharacterised protein family (UPF0172) 
| chr5:20967098-20968027 FORWARD LENGTH=324
Length=324

 Score =  174 bits (94),  Expect = 2e-43
 Identities = 96/97 (99%), Gaps = 0/97 (0%)
 Strand=Plus/Minus

Query  112  CCAATGTTTTTAGCCACACCACAGAGCTCAACATCATCAAACCTCTCGTTTGCATGAAAG  171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCAATGTTTTTAGCCACACCACAGAGCTCAACATCATCAAACCTCTCGTTTGCATGAAAG  122

Query  172  TATCCAAGAATACTTAAACCTTGAGCCACATAATGCT  208
            ||||||| |||||||||||||||||||||||||||||
Sbjct  121  TATCCAACAATACTTAAACCTTGAGCCACATAATGCT  85



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9305749935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5