BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946047
Length=2854
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21430.1 | Symbols: B160 | Zinc finger, RING-type;Transcript... 4176 0.0
> AT4G21430.1 | Symbols: B160 | Zinc finger, RING-type;Transcription
factor jumonji/aspartyl beta-hydroxylase | chr4:11407804-11412159
REVERSE LENGTH=2815
Length=2815
Score = 4176 bits (2261), Expect = 0.0
Identities = 2659/2845 (93%), Gaps = 52/2845 (2%)
Strand=Plus/Plus
Query 21 ATGTCGGAGAACGAAATTGTCCCGGACGAGTTTCGTTGTAACCGCTCCGATGGTAAGCAA 80
||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1 ATGTCGGAGAACGAAATCGTCCCTGACGAGTTTCGTTGCAACCGCTCTGATGGTAAGCAA 60
Query 81 TGGCGGTGCAAGAGACGAGCTTTAGAGGGCAAAAAGATGTGCGAG-GCTCATCACTCGCA 139
||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||
Sbjct 61 TGGCGGTGCAAGAGACGAGCTTTAGAGGGGAAAAAGATGTGTGAGAG-TCATCACTCGCA 119
Query 140 GC-AATCTCTAAAGAGAAGTAAGAAGAAAGTTCCAGAGTCTTCGAAGCTTCTCAGATCAA 198
|| || | |||||| |||||||| |||||||| |||||||||| |||||| |||||||||
Sbjct 120 GCAAAGC-CTAAAGCGAAGTAAGCAGAAAGTTGCAGAGTCTTCTAAGCTTGTCAGATCAA 178
Query 199 G-A-A-GAGGAGGAGATGAAGCGACGTCTTCAGCGATCGAGCCAAACGAAAGCAGTATTA 255
| | | ||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||
Sbjct 179 GAAGAGGAGGAGGAGATGAAGTGGCGTCTTCAGAGATCGAGCCAAACGAAAGCAGAATTA 238
Query 256 GGGCTAAAAGATTGGGGAAATCGAAGAGGAAGCGAGTGATGGGTGAAGCAGAGGCTATGG 315
|| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 GGTCTAAGAGATTGGGGAAATCGAAGAGGAAGAGAGTGATGGGTGAAGCAGAGGCTATGG 298
Query 316 ATGAAGCAGTGAAGAAGATGAAGTTGAAGAGAGGAGATTTGCAGTTGGATTTGATAAGGA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATGAAGCAGTGAAGAAGATGAAGTTGAAGAGAGGAGATTTGCAGTTGGATTTGATAAGGA 358
Query 376 TGGTGTTgaagagagaagttgagaagatgaagagattaccagatacgaagaagaagaaga 435
||||||||||||||||||||||||||| ||||||||||||| ||| | || || ||||
Sbjct 359 TGGTGTTGAAGAGAGAAGTTGAGAAGAGGAAGAGATTACCAAATA-G--TAATAATAAGA 415
Query 436 agaaggagaaTAATAATGGAGGGTTTGGTGAATTTGTTGGAGAAGAGTTAACAAGGGTTC 495
|||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 416 AGAA-GAG-----TAATGGAGGGTTTAGTGAATTTGTTGGAGAAGAGTTAACGAGGGTTC 469
Query 496 TTCCTAATGGTATTATGGCAATTTCACCACCTTCTCCGACTACAAGTAATGTGTCTTCTC 555
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 470 TTCCTAATGGTATTATGGCAATTTCTCCACCTTCTCCTACTACTAGTAATGTGTCTTCTC 529
Query 556 CTTGTGATGTTAAAGTTGGGGAAGAGCCAATTTCGATGACTAAAAGAAGATTTAGGTCGA 615
||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |
Sbjct 530 CTTGTGATGTTAAAGTTGGGGAAGAGCCAATTTCGATGATTAAAAGGAGGTTTAGGTCTA 589
Query 616 AGAACATTGAACCTCTGCCTGTTGGGAAAATGCAGGTGGTTCCTTTCAAGGG-GAATTTG 674
|||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 590 AGAACATTGAACCTTTGCCAATTGGGAAAATGCAGGTGGTTCCTTTCAAGGGTG-ATTTG 648
Query 675 GTTAATGGAAGGAAAGAGAAGAGGAAGAGGTGTCATTGGTGTGGAACCAGAGGATTTGGG 734
|||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||
Sbjct 649 GTTAATGGAAGGAAGGAAAAGAAGATGAGGTGTCATTGGTGTGGAACCAGAGGATTTGGG 708
Query 735 GATTTGATTAGTTGTTTGAGTTGTGAAAGAGAGTTCTTTTGCATAGATTGTATCGAGAAA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GATTTGATTAGTTGTTTGAGTTGTGAAAGAGAGTTCTTTTGCATAGATTGTATCGAGAAA 768
Query 795 AGGAACAAGGGATCGAAAGAAGAAGTTGAGAAAAAATGTCCTGTATGCCGTGGATCATGT 854
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 769 AGGAACAAGGGATCGAAAGAAGAAGTTGAGAAAAAATGTCCTGTATGCCGTGGGTCATGT 828
Query 855 AGGTGCAAAGTTTGCTCAGTCACTAATTCTGGAGTCACTGAATGTAAGGATTCTCAGAGT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 AGGTGCAAAGTTTGCTCAGTCACTAATTCTGGAGTCACTGAATGTAAGGATTCTCAGAGT 888
Query 915 GTCAGGAGTGATATTGACAGGGTCTTGCATCTACATTATGCGGTGTGCATGCTACTTCCA 974
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 889 GTCAGGAGTGATATTGACAGGGTTTTGCATCTACATTATGCGGTGTGCATGCTACTTCCA 948
Query 975 GTACTAAAAGAAATCAATGCAGACCACAAAGTGGAGGTGGAAATTGACGCAGAAAAGAAA 1034
|||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 949 GTACTAAAAGAAATCAATGCGGAACACAAAGTGGAGGTGGAAAATGACGCAGAAAAGAAA 1008
Query 1035 GAGGGAAATCCAGCTGAACCTCAAATCCAAAGCTCTGATTTAACTTCTGATGATCGACAG 1094
|||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct 1009 GAGGGAAATCCAGCTGAACCACAAATCCATAGCTCTGAATTAACCTCTGACGATCGACAG 1068
Query 1095 --CTCT-GCAATGGTCGTGGCTCTGCCATTGTGGATTTTCAAAGAAGGTGCACACGCAGT 1151
|| | |||||||||||| || |||| | |||||||| ||||||| |||||||||||||
Sbjct 1069 CCCTGTAGCAATGGTCGTGACTTTGCCGTAGTGGATTTGCAAAGAATGTGCACACGCAGT 1128
Query 1152 TCCTCTGTTCTCAGGCTAAGTTCTGACCAAGATCAGAGTCAAGAGAGCTTATCTAGAAAG 1211
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCCTCTGTTCTCAGGCTAAATTCTGACCAAGATCAGAGTCAAGAGAGCTTATCTAGAAAG 1188
Query 1212 GCTGGATCGATTAAATGCTCAAATGGTTTAAAATCTCTAACAGTGTGTAAGCGGAAAGAA 1271
| ||||||| |||||||||| |||||| ||||||||| || |||||||||||||||||||
Sbjct 1189 GTTGGATCGGTTAAATGCTCGAATGGTATAAAATCTCCAAAAGTGTGTAAGCGGAAAGAA 1248
Query 1272 GTCAAAGGGTGCAGCAATAACCTTTCTTTGAGTCTATTCCCTCTGGAGTTGACAAGCAAG 1331
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1249 GTCAAAGGGTGCAGCAATAACCTTTTTTTGAGTCTATTCCCTCTGGAGTTGACAAGCAAG 1308
Query 1332 TTAGAGATCAGTGCAGAGGAAGTAGTCAGTTGCTATGAGTTGCCTGAAATCTTAGATAAA 1391
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1309 TTAGAGATCAGTGCAGAGGAAGTAGTCAGTTGCTATGAGTTGCCTGAAATTTTAGATAAA 1368
Query 1392 TTTTCGGGATGTCCGTTTTGTATTGGAATTGAAACGCAATCTAGTAGTAGCGACAGCCAT 1451
| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1369 TATTCGGGATGTCCATTTTGTATTGGAATGGAAACGCAATCTAGTAGTAGCGACAGCCAT 1428
Query 1452 TTGAAAGAAGCATCCAAGAGAAGTGAAGACGGAACTGGTAACTTTTTATACTACCCCACA 1511
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 1429 TTGAAAGAAGCATCCAAGACAAGAGAAGACGGAACTGGTAACTTCTTATACTACCCCACA 1488
Query 1512 GTGATGGATTTTCATCAAAACAATCTCGAACACTTTCAGACACACTGGAGTAAAGGCCAT 1571
||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1489 GTGCTGGATTTTCATCAAAACAATCTGGAACATTTTCAGACACACTGGAGTAAAGGCCAT 1548
Query 1572 CCTGTAATAGTTCGTAGTGTGTTAAAGAGAGGTTCAAGGCTTAATTGGGATCCAGTAGCC 1631
||||||||||||||||||||| ||||||| |||||||| || ||||||||||||||||||
Sbjct 1549 CCTGTAATAGTTCGTAGTGTGATAAAGAGTGGTTCAAGCCTGAATTGGGATCCAGTAGCC 1608
Query 1632 ATGTTCTGTTGCTATCTTATGAACAGAAACAGCAAAACCGGTAATAGTACTGATTGTATG 1691
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1609 TTGTTCTGTCACTATCTTATGAACAGAAACAACAAAACCGGTAATACTACTGATTGTATG 1668
Query 1692 GATTGGTTTGAGGTAGAAATTGGTGTAAAGCAAttttttttGGGGTCTTTGAGAGGAAAG 1751
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1669 GATTGGTTTGAGGTAGAAATTGGTGTCAAGCAATTTTTTTTGGGGTCTTTGAGAGGAAAG 1728
Query 1752 GCTGAGACTAACACTTGTCAAGAAAGGCTGAAGCTGGAGGGATGGCTTTCATCTTCCTTG 1811
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1729 GCTGAGACTAATACTTGTCAAGAAAGGCTGAAGCTGGAGGGATGGCTTTCATCTTCATTG 1788
Query 1812 TTTAAAGAACAGTTCCCAAATCATTATGCTGAAATTCTGAATATCTTACCCATTTCCCAT 1871
|||||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||||
Sbjct 1789 TTTAAAGAACAGTTCCCAAATCATTACGCTGAAATACTGAATATTTTACCAATCTCCCAT 1848
Query 1872 TACATGGATCCAAAGCGCGGTCTACTAAATATTGCAGCCAGCCTACCTGACACTGTACAA 1931
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1849 TACATGGATCCAAAGCGCGGTCTACTAAATATTGCAGCCAACCTACCTGACACTGTACAA 1908
Query 1932 ACACCCGATTTTGGTCCATGCCTCAACATTTCATACAGGAGTGGTGAAGAATTTGCACAC 1991
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1909 CCACCCGATTTTGGCCCATGCCTCAATATTTCATACAGGAGTGGTGAAGAATATGCACAG 1968
Query 1992 CCTGATTCTGTGAAGAAGTTAGGTTTCGAAACTTGTGACATGGTTGATATCTTGTTATAT 2051
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1969 CCTGATTCTGTGAAGAAGTTAGGTTTTGAAACTTGTGACATGGTTGATATCTTGTTATAT 2028
Query 2052 GTCACAGAAACACCTGTATCCACAAAACAGATTTGTAGGATAAGAAAGCTAATGAAAAAT 2111
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2029 GTCACAGAAACACCTGTATCCACAAACCAGATTTGTAGGATAAGAAAGCTAATGAAAAAC 2088
Query 2112 ATCGGAAGAGTAAGATCTAAAAACCCAGAAAAGGGGAGGGAGAGCAGATTTGATAAGGGA 2171
||||||||||||||||||||||| || | |||||||||||| |||||||||||||| ||
Sbjct 2089 ATCGGAAGAGTAAGATCTAAAAATCCGGCAAAGGGGAGGGAAAGCAGATTTGATAA-GG- 2146
Query 2172 AAGAAACGAGATAGGTCTGAAGCATATGCTCAGAGAGATTGGTTGGATGACTATCCCAGT 2231
|||| || | | | | || | | | |||||||||||||| |||||
Sbjct 2147 --GAAA-GA-A-A---C-G-AG---A---T-------A--GGTTGGATGACTATTCCAGT 2181
Query 2232 TCTGATTCAGAATCGCCACAACACTGTTTAGGTGCTAAATGCAGAGGCAGTGAGTTTGAG 2291
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2182 TCTGATTCAGAATCTTCACAACACTGTTTAGGCGCTAAATGCAGAGGCAGTGAGTTTGAG 2241
Query 2292 GGAGAGGAAAGAGAAAGTTGCAACGACTCTTGTGAAGAAGAAAGCCTAAGCAATTCTTAT 2351
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 2242 GGAGAGGAAAGAGAAAGTTGCAACTACTCTTGTGAAGAAGAGAGCCTAAGCAACACTTAT 2301
Query 2352 GGTGCCCAGTGGGATGTATTCCAGAAACAAGATGTTTATAAACTTCTTGAGTATATTAAG 2411
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2302 GGTGCCCAGTGGGATGTATTCCAAAAACAAGATGTTTCTAAACTTCTTGAGTATATTAAG 2361
Query 2412 AACCACTCTCTCGAGCTAGAACCCATGGATTCCGGCAAAAAAGAA-GTGAGTCATCCACT 2470
||||||||||| ||||||||| ||||||||||| |||||||| || |||||||||||| |
Sbjct 2362 AACCACTCTCTGGAGCTAGAATCCATGGATTCCAGCAAAAAA-AAGGTGAGTCATCCATT 2420
Query 2471 ACTTGAGCAGAGTTACTATCTTGATGAGTATCACAAAGCAAGGCTTAAGGAAGAATTTGA 2530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2421 ACTTGAGCAGAGTTACTATCTTGATGAGTATCACAAAGCAAGGCTTAAGGAAGAATTTGA 2480
Query 2531 CATTGAACCATGGAGTTTTGATCAATGTGTTGGGGAAGCAGTCATCGTCCCTGCTGGATG 2590
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2481 CGTTGAACCATGGAGTTTTGATCAATGTGTTGGGGAAGCAGTCATCCTCCCTGCTGGATG 2540
Query 2591 TCCATACCAAAACAGAAAGAATAAGTCATGTGTAAATGCTGTTCTGAAGTTTCTGTCACC 2650
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2541 TCCATACCAAATTAGAAAGAATAAGTCTTGTGTAAATGCGGTTCTGAAGTTTCTGTCACC 2600
Query 2651 TGAGCACGTTTCCGAATCTATTAAACGAGTGGAAG-AGCTCAATCAACTTCCTCAGCGCG 2709
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||
Sbjct 2601 TGAGCACGTTAGCGAATCTATTAAACGAGTG-AAGGAGCTCAATCAACTTCCTCAGAGCG 2659
Query 2710 TCAAAACGAAAGCAAATAAGATTGAGGTGAAGAAAATGGCTATTCATAAAATCAGCGAAG 2769
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2660 TCAAATCGAAAGCAAATAAGATTGAGGTGAAGAAAATGGCGATTCATAAAATCAGCGAAG 2719
Query 2770 CTGTAAAGGAAATCCGGGAGCTCACATCTTCGGATTCAACTGGTGCATCGAGATTATACA 2829
||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 2720 CTGTAAAGGAAATTCGGGAACTCACATCTTCGGATTCAACTGGTGCATTGAGATTATATA 2779
Query 2830 ACTAGAGCTAGAGGTACCAATCTTG 2854
|||||||||||||||||||||||||
Sbjct 2780 ACTAGAGCTAGAGGTACCAATCTTG 2804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141821947861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5