BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946051
Length=2592
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21390.1 | Symbols: B120 | S-locus lectin protein kinase fam... 4034 0.0
> AT4G21390.1 | Symbols: B120 | S-locus lectin protein kinase family
protein | chr4:11394355-11397583 REVERSE LENGTH=2762
Length=2762
Score = 4034 bits (2184), Expect = 0.0
Identities = 2462/2598 (95%), Gaps = 12/2598 (0%)
Strand=Plus/Plus
Query 1 CCAACACCAAAACCCAAGAAAATGAAAATCTTTCGCAAAACCTCACTTTCTCTTCCTCTG 60
||||||| ||| ||||||||||||| | |||| |||||||||||||||| |||| ||||
Sbjct 89 CCAACACTAAACCCCAAGAAAATGAGATTCTTCCGCAAAACCTCACTTTATCTTTCTCTC 148
Query 61 TT-TATCTTCTTCTTCCTCTATGAATCTTCCATAGCTGCAGATACACTCAGAAGAGGTGA 119
|| | | | |||||| || |||||||||||||| |||||| ||||| |||||||||| ||
Sbjct 149 TTCT-TATACTTCTTTCTTTATGAATCTTCCATGGCTGCAAATACAATCAGAAGAGGCGA 207
Query 120 ATCTTTAAGAGACGGTCTAAATCACAAACCTTTAGTCTCTCCAAAAAAGACATTCGAACT 179
||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 208 ATCTTTAAGAGACGGAATCAATCACAAACCTTTAGTCTCTCCACAAAAGACATTCGAGCT 267
Query 180 CGGTTTCTTTAGTCCTGGAAGCTCCACGCATCGTTTCCTAGGGATTTGGTAT-GGAAGCA 238
|||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 268 AGGTTTCTTCAGTCCTGGAAGCTCTACGCATCGTTTCCTAGGGATTTGGTATGGGAA-CA 326
Query 239 TTGAAGATAAAGCTGTGGTATGGGTAGCAAACAGAGCAAAGCCGATTTCAGACCAATCTG 298
| || |||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 327 TCGAGGATAAAGCTGTGGTATGGGTAGCAAACAGAGCAACTCCAATTTCAGACCAATCTG 386
Query 299 GAGTTCTCACGATAAGCAACGATGAG-AATCTCGTGTTATTAGACGGGAAGAACATCACA 357
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 387 GAGTTCTCATGATAAGCAACGATG-GTAATCTCGTGTTATTAGACGGGAAGAACATCACT 445
Query 358 GTCTGGTCTTCAAACATCGAATCAAGCACTAACAACAACAACAACAGAGTCGTTTCTATA 417
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 446 GTCTGGTCTTCAAACATCGAGTCAAGCACTACCAACAACAACAACAGAGTCGTTTCTATA 505
Query 418 CATGACACCGGAAACTTTGTTTTGTCTGAGACCGACACAGATAGAGTTATTTGGGAGAGT 477
|||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 506 CATGACACTGGGAACTTTGTTTTGTCTGAAACCGACACAGATAGACCTATTTGGGAGAGT 565
Query 478 TTCAATCACCCAACGGATACGTTTTTGCCTCAGATGAAAGTTCGTGTGAATCCACAAACC 537
|||||||||||||| ||||| || || || ||||||| ||||||||||||||||||||||
Sbjct 566 TTCAATCACCCAACAGATACCTTCTTACCGCAGATGAGAGTTCGTGTGAATCCACAAACC 625
Query 538 GGAGACAATCACGCTTTTGTCTCATGGAGATCTGAGACTGATCCTTCTCCTGGTAATTAC 597
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 626 GGAGACAATCACGCTTTTGTCTCATGGAGATCTGAGACTGATCCTTCCCCTGGTAATTAC 685
Query 598 TCATTAGGGGTTGATCCTTCTGGAGCACCAGAGATTGTGCTTT-GGAGAGGAAACAAGAC 656
||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 686 TCATTAGGGGTTGATCCCTCTGGAGCACCAGAGATTGTGCTTTGGGA-AGGGAACAAGAC 744
Query 657 GAGGAAATGGCGAAGCGGGCAATGGAACTCCGCGATTTTTACCGGGATTCCGAATATGTC 716
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 745 GAGGAAATGGAGAAGCGGGCAATGGAACTCTGCGATTTTTACCGGGATTCCGAATATGTC 804
Query 717 TCTGTTGACGAATTATCTTTACGGGTTCAAGCTTTCGTCTCCTCCAGATGAAACAGGTAG 776
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 805 TCTGTTGACGAATTATCTTTACGGATTCAAGCTTTCATCTCCTCCAGATGAAACAGGTAG 864
Query 777 CGTGTACTTCACGTATGTTCCTTCGGATTCGTCGA-TGTTACTTAGGTTTAAGGTTCTTT 835
|||||||||||||||||||||||| ||| | || | ||||||||||||||||||||||||
Sbjct 865 CGTGTACTTCACGTATGTTCCTTCAGATCCATC-AGTGTTACTTAGGTTTAAGGTTCTTT 923
Query 836 ATAATGGTACTGAAGAGGAATTGAGATGGAATGAGACTTTGAAGAAGTGGACTAAGTTTC 895
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 ATAATGGAACCGAAGAGGAATTGAGATGGAATGAGACTTTGAAGAAGTGGACTAAGTTTC 983
Query 896 AGTCTGAGCCAGATAGTGAATGTGATCAGTATAATCGTTGTGGCAAGTTTGGTATTTGTG 955
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AGTCTGAGCCAGATAGTGAGTGTGATCAGTATAATCGTTGTGGCAAGTTTGGTATTTGTG 1043
Query 956 ATATGAAAGGCTCTAATGGAATCTGTAGCTGTATTCATGGTTATGAGCAAGTTTCTGTAG 1015
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1044 ATATGAAGGGCTCTAATGGAATCTGTAGCTGTATTCATGGTTATGAGCAAGTTTCTGTTG 1103
Query 1016 GGAATTGGAGTAGAGGTTGTAGAAGAAGAACACCGTTGAAATGTGAGAGGAACATTAGCG 1075
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1104 GGAATTGGAGTAGAGGTTGTAGAAGAAGAACACCGTTGAAGTGTGAAAGGAACATTAGTG 1163
Query 1076 TTGGAGAGGATGAGTTCTTGACTCTGAAATCTGTGAAGTTGCCTGATTTTGAGATTCCTG 1135
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1164 TTGGAGAGGATGAGTTCTTGACTTTGAAATCTGTGAAGTTGCCTGATTTTGAAATTCCTG 1223
Query 1136 CACATGATCTTGTTGATCCTGCGGATTGCAGAGAGAGGTGTCTGAGGAATTGTTCTTGCA 1195
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1224 AACATAATCTTGTTGATCCTGAGGATTGCAGAGAGAGGTGTCTGAGGAATTGTTCTTGCA 1283
Query 1196 ATGCTTATTCTCTTGTTGGTGGTATTGGATGCATGATTTGGAACCAAGATTTAGTCGATT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1284 ATGCTTATTCTCTTGTTGGTGGTATTGGATGCATGATTTGGAACCAAGATTTAGTGGATT 1343
Query 1256 TACAACAGTTTGAAGCTGGTGGCTCTTCGCTTCATATCCGTCTAGCTGATTCCGAAGTAG 1315
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1344 TACAACAGTTTGAAGCTGGTGGTTCTTCGCTTCATATCCGTCTTGCTGATTCCGAAGTAG 1403
Query 1316 GGGAGAACAAGAAAACCAAGATTGCAGTGATTGTCGCGGTTCTTGTTGGTGTGGTTCTGG 1375
||||||||| |||||| |||||||||||||||||||||||||||||||||||| | || |
Sbjct 1404 GGGAGAACAGGAAAACAAAGATTGCAGTGATTGTCGCGGTTCTTGTTGGTGTGAT-CTTG 1462
Query 1376 -TAGGAATCCTAGCTCTGCTTCTATGGAGATTCAAGAAAAAGAAAGATGTTTCAGGAGCA 1434
|||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1463 ATAGGAATCTTTGCTCTGCTTCTATGGAGATTCAAGAGAAAGAAAGATGTTTCAGGAGCA 1522
Query 1435 TATTGTGGTAAGAACACTGATACATCGGTTGTTGTTGCTGATATGACCAAGAACAAAGAA 1494
||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1523 TATTGTGGTAAGAACACCGATACATCGGTTGTTGTTGCTGATCTGACCAAGAGCAAAGAA 1582
Query 1495 ACCACTTCGGCGTTTTCAGGATCAGTGGACATAATGATTGAAGGAAAAGCTGTTAACACA 1554
|| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1583 ACTACTTCAGCGTTTTCAGGATCAGTAGACATAATGATTGAAGGGAAAGCTGTTAACACA 1642
Query 1555 TCTGAGCTACCTGTCTTTTGTCTCAATGCTATAGCCATAGCTACTAATGATTTCTGCAAA 1614
|| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1643 TCCGAGTTACCTGTCTTTTCTCTGAATGCTATAGCCATAGCTACTAATGATTTCTGCAAA 1702
Query 1615 GAAAATGAGCTCGGAAGAGGCGGATTCGGACCAGTCTACAAGGGTGTTCTTGAAGATGGA 1674
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1703 GAAAATGAGCTTGGAAGAGGTGGATTCGGACCAGTCTACAAGGGTGTTCTCGAAGATGGA 1762
Query 1675 CGTGAGATAGCTGTGAAGAGATTGTCTGGTAAATCTGGACAAGGAGTTGATGAATTCAAG 1734
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1763 CGTGAGATAGCTGTGAAGAGATTGTCTGGTAAATCAGGACAAGGAGTTGATGAATTCAAG 1822
Query 1735 AATGAGATCATTCTCATAGCGAAGCTTCAACATCGGAATCTTGTGAGATTACTTGGATGT 1794
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 AATGAGATTATTCTCATAGCGAAGCTTCAACATCGGAATCTTGTGAGATTACTTGGATGT 1882
Query 1795 TGCTTCGAGGGCGAAGAGAAAATGCTTGTTTATGAGTATATGCCTAACAAGAGCTTAGAT 1854
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1883 TGCTTCGAGGGAGAAGAGAAAATGCTTGTTTATGAGTATATGCCTAACAAGAGCTTGGAT 1942
Query 1855 TTCTTCCTCTTTGATGAAACGAAACAAGCGTTGATAGACTGGAAACTGCGGTTTTCGATA 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 TTCTTCCTCTTTGATGAAACGAAACAAGCGTTGATAGACTGGAAACTGCGGTTTTCGATA 2002
Query 1915 ATTGAAGGGATTGCAAGAGGATTGCTTTATCTTCACAGAGATTCAAGATTGAGAATCATT 1974
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2003 ATTGAAGGGATTGCGAGAGGATTGCTTTATCTTCATAGAGATTCAAGATTGAGAATCATT 2062
Query 1975 CATAGAGATTTGAAGGTTAGCAATGTGTTGTTAGATGCAGAGATGAATCCGAAGATCTCA 2034
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2063 CATAGAGACTTGAAGGTTAGCAATGTGTTGTTAGATGCAGAGATGAATCCAAAGATCTCA 2122
Query 2035 GATTTTGGTATGGCAAGGATCTTTGGTGGAAACCAAAATGAAGCTAACACGGTTCGCGTC 2094
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2123 GATTTTGGTATGGCAAGGATCTTTGGTGGTAACCAAAATGAAGCTAACACGGTTCGCGTT 2182
Query 2095 GTTGGAACTTACGGATACATGTCTCCTGAATACGCGATGGAAGGACTTTTCTCGGTAAAA 2154
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2183 GTTGGAACTTACGGATACATGTCTCCTGAATACGCGATGGAAGGACTTTTCTCGGTGAAA 2242
Query 2155 TCCGATGTTTACAGCTTCGGTGTATTGTTGCTTGAGATTGTAAGTGGGAAGAGGAACACA 2214
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2243 TCCGATGTTTACAGCTTCGGTGTCTTGTTGCTAGAGATTGTAAGTGGGAAGAGGAACACA 2302
Query 2215 AGTCTTCGATCTTCTGAACATGGTAGCCTCATTGGTTATGCTTGGTATTTGTATACTCAT 2274
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2303 AGTCTTCGATCTTCTGAACATGGAAGTCTCATTGGTTATGCTTGGTATTTGTATACTCAT 2362
Query 2275 GGGAGATCAGAGGAGCTTGTGGATCCAAAGATCAGGGTCACGTGCAATAAGCGTGAGGCA 2334
|||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||||
Sbjct 2363 GGGAGATCAGAGGAGCTTGTGGATCCTAAGATCAGGGTCACATGCAGTAAGCGAGAGGCC 2422
Query 2335 TTGAGGTGCATACACGTAGCGATGCTGTGTGTTCAAGATTCGGCTGCGGAGAGACCGAAC 2394
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2423 TTGAGATGCATACACGTAGCGATGCTATGTGTTCAAGATTCGGCTGCGGAGAGACCCAAC 2482
Query 2395 ATGGCTGCAGTTTTGCTCATGTTAGAGAGTGACACAGCGACGCTAGCTGCGCCTAGAGAG 2454
|||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 2483 ATGGCTTCAGTTTTGCTTATGTTAGAGAGTGACACAGCGACGCTCGCTGCGCCTAGACAA 2542
Query 2455 CCAACGTTTACTTCCAACAGAAGAAACTCTATTGATGTCAACTTTGCTCTTGATTCGAGC 2514
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2543 CCAACGTTTACTTCCACCAGAAGAAACTCCATTGATGTCAACTTTGCTCTTGATTCGAGC 2602
Query 2515 CAACAATACATTGTTTCTTCTAATGAGATCACTTCTACGGTTGTTCTTGGACGATAAGAT 2574
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2603 CAACAATACATCGTTTCTTCTAATGAGATCACTTCAACGGTTGTTCTTGGACGATAAGAT 2662
Query 2575 ACTTTTGTTTGTTCTTTT 2592
|||||||||||||||||
Sbjct 2663 TCTTTTGTTTGTTCTTTT 2680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128678208795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5