BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946057
Length=343
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42620.1 | Symbols: MAX2, ORE9, PPS | RNI-like superfamily p... 329 8e-90
> AT2G42620.1 | Symbols: MAX2, ORE9, PPS | RNI-like superfamily
protein | chr2:17756140-17758468 FORWARD LENGTH=2329
Length=2329
Score = 329 bits (178), Expect = 8e-90
Identities = 246/277 (89%), Gaps = 11/277 (4%)
Strand=Plus/Minus
Query 66 TCGCCGGAATTCTTAATCGACAACGACTGCAATCCTCCACATAGAGCCACGCCGTCGAAC 125
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 1106 TCGCCGGAATTCTTAATCGACAACGACTGCAATCCTCCACATAAAGCCACACCGTCGAGC 1047
Query 126 CTCCTCTATTCTGTAGTAGAGCAAACACCTTGGAACTGTCCTAGCTTCAATGTTCTTAGC 185
|||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1046 CTCCTCCATTCTGTAGCAGAGCAAACACCTTGGAACTGTCCTAGCTTCAATACTCTTAAC 987
Query 186 TTCTTGCATTTAAAATTCTATGTCTATAAAGCTACGCCATGGCCACTATGCTTCACTTCA 245
|||||||||||| ||||| ||| || ||||||||| | |||||||||||||| ||
Sbjct 986 TTCTTGCATTTAGAATTCAATGCCTCTAAAGCTAC---A---CCACTATGCTTCACATC- 934
Query 246 CATCCTTCCCTACGTCAAGAACCAGCTCTTCTATATTCGGTAAACCAGAGAAAACCTCAA 305
| | |||| |||||||||||||||||| |||| |||||||||||| |||||||| ||||
Sbjct 933 C-T--TTCC-TACGTCAAGAACCAGCTCCTCTAGATTCGGTAAACCTGAGAAAACTTCAA 878
Query 306 TTAGCGTCCCCGCCATGACCGCTGAATCTCCACCTTC 342
|||||||||||||| |||| |||||||||||| ||||
Sbjct 877 TTAGCGTCCCCGCCGTGACAGCTGAATCTCCAGCTTC 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16035411931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5