BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946058
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21350.1 | Symbols: B80, PUB8 | plant U-box 8 | chr4:1135614... 1735 0.0
> AT4G21350.1 | Symbols: B80, PUB8 | plant U-box 8 | chr4:11356143-11357267
REVERSE LENGTH=1125
Length=1125
Score = 1735 bits (939), Expect = 0.0
Identities = 1066/1128 (95%), Gaps = 6/1128 (1%)
Strand=Plus/Plus
Query 21 ATGGCCTTTGACTTACCAAACGATTTCAGGTGCCCGATCTCTCTTGAGATTATGTCTGAC 80
||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct 1 ATGGCCTTTGATTTACCAAACGATTTCAGATGCCCGATCTCCCTTGAGATCATGTCCGAC 60
Query 81 CCGGTTATCCTCCAATCGGGTCATACTTTCGATCGGGTCTCTATCCAACAATGGATTGAC 140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAGTTATCCTCCAATCGGGTCATACTTTCGATCGGGTCTCTATCCAACAATGGATTGAC 120
Query 141 TCCGGCAATCGAACTTGCCCAATCACCAAGCTCCCGCT-ATCTGAAAACCCTTCTCTGAT 199
||||||||||||||||| |||||||||||||| || || ||| |||| ||||| ||||||
Sbjct 121 TCCGGCAATCGAACTTGTCCAATCACCAAGCTACC-CTTATCAGAAACCCCTTATCTGAT 179
Query 200 TCCCAATCACGCACTTCGTAGCTTAATTTCAAATTTTGCTCATGTGAGTCCTAAGGAATC 259
||||||||||||||||||||||||||||| ||| || || |||||||||| |||||||||
Sbjct 180 TCCCAATCACGCACTTCGTAGCTTAATTTTAAACTTCGCCCATGTGAGTCTTAAGGAATC 239
Query 260 AACACGTCCTCGAACTCAACAAGAACACTCTCACTCTCAATCCCAAGCTTTAATCTCCAC 319
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCACGTCCTCGAACTCAACAAGAACACTCTCACTCTCAATCCCAAGCTTTAATCTCCAC 299
Query 320 TCTCGTCTCTCGATCGCCGTCTAATGCGTCAAAGCTCGAGTCTTTGAGTCGACTCGTTCG 379
||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 300 TCTCGTCTCTCAATCGTCGTCTAATGCATCAAAGCTCGAGTCTTTGACTCGACTCGTCCG 359
Query 380 TCTCACGAAGCGAGACTCGTTAATCAGGAGGAAAGTTACTGAATCAGGAGCGGTTCGTGC 439
||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 360 ACTCACGAAGCGAGACTCGTCAATCAGGAGGAAAGTTACTGAGTCAGGAGCAGTTCGTGC 419
Query 440 GGCGT-TGGATTGTGTTGACTCTGGTAATCAGGTTTTGCAGGAAAAGTCTCTGTCTTTGC 498
||| | ||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 420 GGC-TCTGGATTGTGTTGACTCTTGTAATCAGGTTTTACAAGAAAAGTCTCTGTCTTTGC 478
Query 499 TTTTGAATCTTAGTTTAGAAGATGATAACAAAGTGGGTTTAGTAGCTGATGGAGTGATAA 558
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 479 TTTTGAATCTTAGTTTAGAAGATGATAACAAAGTTGGTTTAGTCGCTGATGGAGTGATAA 538
Query 559 GACGGATTGTTGCTGTTTTACGGGTCGGGTCACCGGATTGTAAAGCGATTGCTGCTACTC 618
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 GACGGATTGTTACTGTTTTACGAGTCGGGTCACCGGATTGTAAAGCGATTGCTGCTACTC 598
Query 619 TGTTAACGAGTTTAGCTGTTGTTGAAGTTAATAAAGCCACTATTGGATCGTATCCTGATG 678
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 599 TGTTAACGAGTTTAGCTGTTGTTGAAGTGAATAAAGCTACTATTGGATCATATCCTGATG 658
Query 679 CAATCTCTGCTCTTGTTTATCTTCTCCGGGTAGGGAATGATAGGGAGAGAAAGGAATCAG 738
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAATCTCTGCTCTTGTTTCTCTTCTCCGGGTAGGGAATGATAGGGAGAGAAAGGAATCAG 718
Query 739 CGACGGCTCTTTACGCGCTCTGCTCGTTTCCGGATAATCGAAAACGGGTTGTGGATTGTG 798
| |||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||
Sbjct 719 CTACGGCTCTTTACGCTCTTTGCTCGTTTCCCGATAATCGGAAACGGGTTGTGGATTGTG 778
Query 799 GGTCGGTGCCTATTTTGGTTGAAGCAGCTGATTCAGGGCTAGAGAGAGCAGTGGAAGTGT 858
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 779 GGTCGGTGCCTATTTTGGTTGAAGCTGCTGATTCAGGGTTAGAGAGAGCAGTGGAAGTGT 838
Query 859 TGGGACTTTTGGTTAAGTGTAGAGGAGGAAGAGAGGAAATGAGTAAAGTAAGTGGCTTTG 918
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 839 TGGGACTTTTGGTTAAGTGTAGAGGAGGAAGAGAAGAGATGAGTAAAGTAAGTGGTTTTG 898
Query 919 TTGAGGTTTTGGTTAACGTTTTGAGGAATGG-AAGTTTGAAAGGGATTCAGTATTCTCTG 977
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 899 TTGAGGTTTTGGTTAACGTTTTGAGGAATGGGAA-TTTGAAAGGGATTCAGTATTCTCTG 957
Query 978 TTTATCCTCAATTGCTTGTGTTGTTGTAGCCGAGAAATCGTCGATGAGGTTAAAAGAGAA 1037
|||||||||||||||||||||||||||||| |||| || || ||||||||||| ||||||
Sbjct 958 TTTATCCTCAATTGCTTGTGTTGTTGTAGCGGAGAGATAGTTGATGAGGTTAAGAGAGAA 1017
Query 1038 GGTGTTGTAGAGATATGCTTTGGTTTGGAGGATAATGAGAGTGAGAAAATCAGAAGGAAT 1097
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 GGTGTTGTAGAGATATGCTTTGGTTTTGAGGATAATGAGAGTGAGAAAATCAGAAGGAAT 1077
Query 1098 GCTACTATCTTAGTCCATACTTTACTTGGGATTTCAATGAATTCATGA 1145
|||||||||||||| |||||||||||||||||| |||||| |||||||
Sbjct 1078 GCTACTATCTTAGTTCATACTTTACTTGGGATTCCAATGAGTTCATGA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5