BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946091
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21050.1 | Symbols: | Dof-type zinc finger domain-containin... 708 0.0
AT4G21030.1 | Symbols: ATDOF4.2, ATDOF4;2 | Dof-type zinc finge... 396 2e-109
> AT4G21050.1 | Symbols: | Dof-type zinc finger domain-containing
protein | chr4:11238441-11239073 FORWARD LENGTH=633
Length=633
Score = 708 bits (383), Expect = 0.0
Identities = 530/601 (88%), Gaps = 10/601 (2%)
Strand=Plus/Plus
Query 21 ATGGATAACTTGAATGTTTTTGCAAACGAAGACAATCAAGTGGATGGTGTGAAGCCACCC 80
|||||||||||||||||||| || || ||||||||||||||| ||||| ||||| |
Sbjct 1 ATGGATAACTTGAATGTTTTCGCTAATGAAGACAATCAAGTGAATGGTTTGAAG---CGT 57
Query 81 CCACCCCCACCGCGAGTGTGTCCAAGGTGTGATTCTGATAACACTAAGTTTTGCTATTAC 140
|||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 58 CCACCCCCGTCACGAGTGTGTCCAAGGTGTGATTCTGATAACACTAAGTTTTGCTTTTAC 117
Query 141 AACAACTACAGTGAGTCTCAACCGCGCTACTTCTGCAAGAATTGTCGTAGATATTGGACT 200
|||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 118 AACAACTACAGTGAATCTCAACCGCGCTACTTTTGCAAAAACTGTCGTAGATATTGGACT 177
Query 201 CATGGTGGGGCTTTAAGGAACATACCAATCGGTGGAAGTTGTCGTAAACCTAAGCGTCCG 260
|||||||| |||||||| ||||||||| | |||||||||||||||||||| ||||||| |
Sbjct 178 CATGGTGGAGCTTTAAGAAACATACCAGTTGGTGGAAGTTGTCGTAAACCAAAGCGTCTG 237
Query 261 AAGGTAGATCAATCTTTGGTTTCTCAAATGGTTTCCGTTGAGAACAGAAG-AGTTGATCA 319
|||||||||||||||| | ||||| | |||||||| ||||||||| || | || ||||
Sbjct 238 AAGGTAGATCAATCTTCGATTTCTGAGATGGTTTCTGTTGAGAACC-AACCAATTAATCA 296
Query 320 TCAACCTTTCAAACAGATTTATGAAAACAACGAGTTTGTTCGATCTTTTGGTGCTTCATC 379
|||| |||||| ||| | | | |||||||| ||||||||||||||||||| ||||| ||
Sbjct 297 TCAATCTTTCAGACAAACTCAAGAAAACAATGAGTTTGTTCGATCTTTTGACGCTTCTTC 356
Query 380 TTCTTCTATTGCTGCTGTTGTTG-GTAACCATTTCGGTTATCTGAGTGAACTTCATGGTG 438
|||| ||| || | ||| ||| | |||||||| |||||||| ||||||||||||||||
Sbjct 357 TTCTGCTACTGTTACTGCCGTTCCG-AACCATTTTGGTTATCTAAGTGAACTTCATGGTG 415
Query 439 TGACAAATTTGCTTCCAGTTCGAAGTTTTCGAA---TGGATTGCTTAGATTTCGGTGATG 495
| ||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||
Sbjct 416 TAACAAATTTGCTTCCAATTCAAAGTTTTCGAACAATGGACTGCTTAGATTTCGGTGATG 475
Query 496 ATTCTTTTCAACAAGATTATCACGATGTTGGATCCAATGATTTGATTGGTAACCCTTTGA 555
| ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 476 AATCTTTTCAACAAGGTTATTACGATGTTGGATCCAATGATTTGATTGATAACCCTTTGA 535
Query 556 TAAACCAATCCATTGGTGGATATGTTGATAATCTTAAAAGTTATCGCATAAATCAAGTGG 615
||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||
Sbjct 536 TAAACCAATCCATCGGTGGGTATGTTGATAATCTTACAAGTTATTGCATAAATCAAGTGG 595
Query 616 A 616
|
Sbjct 596 A 596
> AT4G21030.1 | Symbols: ATDOF4.2, ATDOF4;2 | Dof-type zinc finger
domain-containing protein | chr4:11231414-11231998 FORWARD
LENGTH=585
Length=585
Score = 396 bits (214), Expect = 2e-109
Identities = 425/520 (82%), Gaps = 42/520 (8%)
Strand=Plus/Plus
Query 84 CCCCCACCGCGAGTGTGTCCAAGGTGTGATTCTGAT-AACACTAAG-TTTTGCTA-TTAC 140
||||||||||||||||||||||||||| |||| ||| || || || || |||| || |
Sbjct 52 CCCCCACCGCGAGTGTGTCCAAGGTGTTATTCCGATCAA-AC-CAGATTCAGCTACTT-C 108
Query 141 AACAACTAC-AGTGAGTCTCAACCGCGCTACTTCTGCAAGAATTGTCGTAGATATTGGAC 199
|||||| || || ||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 109 AACAACAACAAG-AAGTCTCAACCGCGCTACAAATGCAAGAATTGTTGTAGATGTTGGAC 167
Query 200 TCATGGTGGGGCTTTAAGGAACATACCAATCGGTGGAAGT-TGTCG-TAAA-CCTAAGCG 256
||||||||| | |||||||||||||||| || ||||| | ||| | |||| || || |
Sbjct 168 TCATGGTGGAGTTTTAAGGAACATACCAGTCACTGGAA-TATGT-GATAAATCC-AATCT 224
Query 257 TCCGAAGGTAGATCAATCTTTGGTTTCTCAAATGGT-TTCCGTTGAGA-AC-AGAAGAGT 313
||||||| |||||||||||| ||||||||||||| | || | ||||| | | ||| |
Sbjct 225 TCCGAAGATAGATCAATCTTCGGTTTCTCAAATGATCTT-GGCTGAGATCCAACAAG-G- 281
Query 314 TGATCATCAACCTTTCAAACAGATTTATGAA-AACAACGAGTTTGTTCGATCTTTTGGTG 372
||||||||||||||||| | | || | || || ||| | | ||| | || |||
Sbjct 282 CAATCATCAACCTTTCAAA-A-AATT-TCAAGAA-AAC-A---T-TTC-A---GTTAGTG 328
Query 373 CTTCATCTTCTTCTA-TTGCTGCTGTTGTTGGTAACCATTTCGGTTATCTGAGTGAACTT 431
||| |||||||| | || | || ||||||| |||||||||| | || |||||||||||
Sbjct 329 TTTCTTCTTCTTC-AGATGTTTCTATTGTTGGGAACCATTTCGATGATTTGAGTGAACTT 387
Query 432 CATGGTGTGACAAATT-TGCTTCCAGTTCGAAGTTTT-CGAATGGATTGCTTAGATTTCG 489
|||||| | ||||||| | | |||| ||||||||||| | ||||||| |||||||||| |
Sbjct 388 CATGGTATAACAAATTCTAC-TCCAATTCGAAGTTTTAC-AATGGATCGCTTAGATTTTG 445
Query 490 GTGATGATTCTTTTCAACAAGA-TTATCACGATGTTGGATCCAATGATTTGATTGGTAAC 548
|||| || || ||||||||||| |||| |||||||||| |||||||||||||||||||||
Sbjct 446 GTGAAGAATCGTTTCAACAAGATTTAT-ACGATGTTGGTTCCAATGATTTGATTGGTAAC 504
Query 549 CCTTTGATAAACCAATCCATTGGTGGATATGTTGATAATC 588
||||||||||||||||| ||||||||||||||||||||||
Sbjct 505 CCTTTGATAAACCAATCAATTGGTGGATATGTTGATAATC 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5