BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946092

Length=626
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21080.1 | Symbols:  | Dof-type zinc finger domain-containin...   200    1e-50


> AT4G21080.1 | Symbols:  | Dof-type zinc finger domain-containing 
protein | chr4:11254602-11255351 REVERSE LENGTH=750
Length=750

 Score =  200 bits (108),  Expect = 1e-50
 Identities = 247/311 (79%), Gaps = 22/311 (7%)
 Strand=Plus/Plus

Query  22   ATGGATACCTTGAATGTTTTTGCAAATGAAGACAATCAAGTGAATGTTGTGAAG----C-  76
            ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    | 
Sbjct  1    ATGGATAACTTGAATGTTTTCGCAAATGAAGACAATCAAGTGAATGATGTGAAGCCCCCA  60

Query  77   CC-CCACCA---CGAGTATGTCCAAGGTGTTATTCCGATCAA-ACAAAATTCTGCTACTT  131
            || ||||||   ||||| ||| |||||||| |||| ||| || || ||||| || || ||
Sbjct  61   CCACCACCACCTCGAGTGTGTGCAAGGTGTGATTCTGAT-AATACTAAATTTTGTTA-TT  118

Query  132  -CAACAACTAC-AAAACGTCTCAACCACGCTACAAATGCAAGGACTGTCGTAGATACTGG  189
             ||||||||||    | || ||| ||||| |||   |||||| |||||||||||||||||
Sbjct  119  ACAACAACTACTGTGA-GTTTCAGCCACGATACTTCTGCAAGAACTGTCGTAGATACTGG  177

Query  190  ACTCATGGTGGAGCTTTAAGGAACATACCAATCGGTGGAAGTTGCCGTAAATCCAAGCTT  249
            ||||||||||| |||||||| ||||||||||| ||||||||| | |||    |||| |  
Sbjct  178  ACTCATGGTGGGGCTTTAAGAAACATACCAATTGGTGGAAGTAGTCGTG---CCAAACGG  234

Query  250  CCAAAGATTGATCAATCTTCAGTTTCTCAAATGGCTTCTGTTGAGATTCAACCGAG-TAA  308
             ||| | |  ||||| |||| ||| |||  |||| |||||||||||  |||| ||| |||
Sbjct  235  GCAAGGGTAAATCAACCTTCGGTTGCTCGGATGGTTTCTGTTGAGACCCAAC-GAGGTAA  293

Query  309  TCA-TCAACCT  318
             || |||||||
Sbjct  294  -CAATCAACCT  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30190722347


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5