BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946108
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20870.1 | Symbols: FAH2, ATFAH2 | fatty acid hydroxylase 2 ... 1247 0.0
> AT4G20870.1 | Symbols: FAH2, ATFAH2 | fatty acid hydroxylase
2 | chr4:11174450-11176881 REVERSE LENGTH=1102
Length=1102
Score = 1247 bits (675), Expect = 0.0
Identities = 731/758 (96%), Gaps = 4/758 (1%)
Strand=Plus/Plus
Query 1 TCAGTCTCATATAGTAGCAAAGATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCC 60
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TCAGTCTCATAAAGTGGCAAAGATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCC 256
Query 61 ACTTGTCTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTAT 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ACTTGTGTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTAT 316
Query 121 TGTATGCGTAGAGGGTCCTCGtttttttGAAAGTGATTTTTGGGAGTTCTTGACTCGCAC 180
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 317 TGTATGCGTTGAGGGTCCTCGTTTTTTCGAAAGTGATTTTTGGGAGTTTTTGACTCGCAC 376
Query 181 GGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATC 436
Query 241 GGCGAGGAAGGGACTTACAATTCCCCAGATCGGTTTAATAGTTGCCTTTGGTGTACTCAC 300
|||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 437 GGCGAGTAAGGGACTTACGTTTCCCCAGATCGGTTTAATAGTTGCTTTTGGTGTACTCAC 496
Query 301 ATGGACACTTCTCGAGTACACGCTTCATCGTTTCCTTTTCCATATCCAAACCAAGAGTTA 360
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 497 GTGGACACTGCTCGAGTACACGCTTCATCGCTTCCTTTTCCACATCCAAACCAAGAGTTA 556
Query 361 CTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGG 616
Query 421 CCTTCGTCTTGTTTTCCCTCCTACCGCTACAGCTATTCTCTTGGTTCCACTATGGAAGCT 480
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 617 CCTTCGTCTTGTTTTCCCTCCTACAGCAACAGCTATTCTCTTGGTTCCACTATGGAAGCT 676
Query 481 TCTCCATATCTTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGG 540
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TCTCCATCTCCTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGG 736
Query 541 CTATGTGATGTATGATATTACTCATTACTATCTACACCATGGTCAACCTAAAGAACCAAC 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 737 CTATGTGATGTATGATATTACCCATTACTATCTACACCATGGTCAACCTAAAGAACCAAC 796
Query 601 CTTTAAACATCTGAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATA 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 CTTTAAACATCTTAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATA 856
Query 661 TGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTAT-AAAGGCCG 719
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 857 TGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTATTAAAG-CCG 915
Query 720 CC-CAGAAGAAAAGCTAAACCGGATTTCTGTTTGCCAT 756
| | |||||| ||||||| ||||||||||||||||||
Sbjct 916 CTGC-GAAGAAGAGCTAAATCGGATTTCTGTTTGCCAT 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5