BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946113
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20820.1 | Symbols: | FAD-binding Berberine family protein ... 2377 0.0
AT5G44440.1 | Symbols: | FAD-binding Berberine family protein ... 407 2e-112
> AT4G20820.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11150160-11151758 FORWARD LENGTH=1599
Length=1599
Score = 2377 bits (1287), Expect = 0.0
Identities = 1505/1609 (94%), Gaps = 20/1609 (1%)
Strand=Plus/Plus
Query 26 ATGAAACTCCAAAGCCTCTTTAGCTATGTAT-TGATCTTCTCCACTACCATTACCTTACT 84
|||||| |||||||| ||||||||| ||| | ||||||||| |||||| | ||| |||||
Sbjct 1 ATGAAATTCCAAAGCTTCTTTAGCTCTGT-TCTGATCTTCTTCACTACTAGTACTTTACT 59
Query 85 TCTATCAAGTT-CTCATCCGGTTTCAGCTAACCGGACCAATCAAGCCGGTTTCCTCCAAT 143
|||||||| || ||||||||||||||||||||||| | |||||| || ||||||||||||
Sbjct 60 TCTATCAA-TTCCTCATCCGGTTTCAGCTAACCGGTCTAATCAATCCAGTTTCCTCCAAT 118
Query 144 GTCTCTCTCTCCGGTTTAACGACTCTACCATCGTTTCAAGAGTCATACACACACCAAACG 203
|||| ||||||| ||| |||||||| | |||||| |||| ||||||||||||||||||||
Sbjct 119 GTCTATCTCTCCAGTTAAACGACTCCAACATCGTCTCAAAAGTCATACACACACCAAACG 178
Query 204 ACACTTCTTTCTCCTCTGTCTTAGCGTCATCAATACAGAATCCAAGATTCTCTGCTCCTG 263
|||||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 179 ACACTTCTTTCTCCTCAGTCTTAGCTTCATCAATACAAAATCAAAGATTCTCTGCTCCTG 238
Query 264 ATACACCTAAACCGGTTTTAATCCTAACTCCGGTTCAACCTTCCGATGTTCAATCAGCGG 323
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 ATGTACCTAAACCGGTTTTAATCCTAACTCCGGTTCAACCTTCTGATGTTCAATCAGCGG 298
Query 324 TTAAATGCGCACGCCGGTTCGATATCCACATCAGAACCCGAAGCGGAGGACACGATTACG 383
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 299 TTAAATGCGCACGCCGGTTCGGTATCCACATCAGAACCCGAAGCGGAGGACACGACTACG 358
Query 384 AAGGACTCTCTTACGTTACCCGCAAACCCTTCGTAATCCTCGATTTAAGAAACCTCCGGT 443
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGGCCTCTCTTACGTTACACACAAACCCTTCGTAATCCTCGATTTAAGAAACCTCCGGT 418
Query 444 CTATCACAATTGACGTCGATAACCGGTCGGTTTGGGTCCAAACCGGAGCCACGATCGGTG 503
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTATCACAGTTGACGTCGATAACCGGTCGGTTTGGGTCCAAACCGGAGCCACGATCGGTG 478
Query 504 AACTAT-TCTGCGAAATCGGCAAAAAGAATCGAACTTTAGCGTTCCCCGCCGGTGTTTGC 562
|||||| | | ||||||||| ||||||||||| ||||||||||| |||||||| ||||||
Sbjct 479 AACTATAT-TACGAAATCGGTAAAAAGAATCGTACTTTAGCGTTTCCCGCCGGAGTTTGC 537
Query 563 CCCACCGTAGGCGTCGGAGGACACTTCAGCGGCGGAGGCTACGGTACTTTACTGAGAAAA 622
|||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 538 CCCACCGTCGGCGTCGGAGGACATTTTAGCGGCGGAGGATACGGTACTTTACTGAGAAAA 597
Query 623 TACGGTTTGGCAGCCGATCACGTGATAGACGCACGTGTTGTCGATGCACGAGGGAGGATT 682
||||||| ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 598 CACGGTTTAGCAGCTGATCACGTGATAGACGCACGTGTTGTCGACGCAAGAGGAAGGATT 657
Query 683 CTTGAAAGACGAGAGATGGGTGAAGATTTCTTCTGGGCGATTCGTGGAGGTGGTGGATCA 742
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTTGAGAGACGAGAGATGGGTGAAGATTTCTTCTGGGCGATTCGTGGAGGTGGTGGATCA 717
Query 743 AGCTTTTGCGTTGTACTTTCATGGAAGATCGGTTTAATCAATGTTCCATCAACAGTAACT 802
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGCTTTTGCGTTGTTCTTTCATGGAAGATCGGTTTAATCAATGTTCCATCAACAGTAACT 777
Query 803 GTCTTCAACGTCACGAAATTCTCAGAACAGAGTTCTTTAAAGATCATTCATCGTTGGCAA 862
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 GTCTTCAACGTCACGAAATTCTCAGAACAGAGTGCTTTAAAGATCATTCATCGTTGGCAA 837
Query 863 TTTGTGTCTGATAGAGTCTCTGATGATTTATTCATACGAGTTATGTTGCAGAGATACAAG 922
|| ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 TTCGTGGCTGATAAAGTCTCTGATGATTTATTCATAAGAGTTATGTTGCAGAGATACAAG 897
Query 923 AACATGGTTCGAGCTTCGTTTCCGGGTTTGTATCTTGGTTCGGTTAACAATCTGTTGAAA 982
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 898 AACATGGTTCGAGCTTCGTTTCCGGGTTTGTATCTTGGTTCGGTTAAGAATCTGTTGAAA 957
Query 983 ATGGTAAACCGGGAATTTCCTGAATTGGGTTTGGAGGAAGATGATTGTCA-AGAGATGAG 1041
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 958 ATGGTAAACAAAGAATTTCCTGAATTGGGTTTGGAGGAAGATGATTGT-ACAGAGATGAG 1016
Query 1042 TTGGATTGAGTCTGTGGTTTGGTTTGCTGAGTTAGGAGAAGAACCGATCGATGTTCTTAG 1101
|||||||||||| || |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1017 TTGGATTGAGTCAGTAATTTGGTTTGCTGAGTTAGGAGAAGAACCAATCAATGTTCTTAC 1076
Query 1102 TAAACGTACACGAGCGTCGTTAGCTTTCAAGGCTAAATCTGATTTTGTTCAAGAACC-AC 1160
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1077 TAAACGTACACGAGCATCGTTGGCTTTCAAGGCTAAATCTGATTTTGTTCAAGAACCGA- 1135
Query 1161 TGCCTGAAACCGCGATTTC-AAATTTGTGGAGACGGTTGCAAGAACCGGAAGCAGAGCAT 1219
||||| ||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1136 TGCCTAAAACCGCGATTTCGAAGCTT-TGGAGACGGTTGCAAGAACCGGAAGCAGAGCAT 1194
Query 1220 GCTCAGCTAATTTTCACTCCATTTGGTGGTAAAATGAGTGAGATTGCGGATTACGAGACG 1279
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1195 GCTCAGCTAATTTTCACTCCATTTGGTGGTAAAATGAGTGAGATTGCAGATTACGAAACA 1254
Query 1280 CCATTTCCGCATCGAAAGGGGAATATAT-TCGAGATTCAGTATC-TGAATTACTGGAGAG 1337
|||||||||||| | ||||||||||||| | ||||||||||| | |||||||||||||||
Sbjct 1255 CCATTTCCGCATAGGAAGGGGAATATATAT-GAGATTCAGTA-CTTGAATTACTGGAGAG 1312
Query 1338 GAGACGTGAAAGAGAAGTATATGAGATGGGTGGAGAGAGTTTACGATGATATGAGTGAGT 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 GAGACGTGAAAGAGAAGTATATGAGATGGGTGGAGAGAGTTTACGATGATATGAGTGAGT 1372
Query 1398 TTGTGGCGA-GTTCTCCGAGAGGAGCTTATATAAATCTCAGAGATCTTGATTTGGGGATG 1456
||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1373 TTGTGGCGAAGT-CTCCGAGAGGAGCTTATATAAATCTGAGAGATCTTGATTTGGGAATG 1431
Query 1457 TATGTTGGAGGTAAGAGGAGTAAGTACGAGGAAGGAAAGAGTTGGGGAGTGAAGTATTTT 1516
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1432 TATGTTGGAGTTAAGAGGAGTAAGTACGAGGAAGGGAAGAGTTGGGGAGTGAAGTATTTT 1491
Query 1517 AA-AGGTAATTTCGAGAGATTGGTGAGGGTTAAGACAAGTGTTGATCCTTTTGATTTCTT 1575
|| | |||||| |||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1492 AAGAA-TAATTTTGAGAGATTGGTGAGAGTTAAGACAAGTGTTGATCCTTCTGATTTCTT 1550
Query 1576 CTGTGATGAACAGAGTATTCCTCCTTTTAAATCTGTTGAAGTTATTTGA 1624
||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1551 CTGTGATGAACAGAGTATTCCTCCTTTTACGTTTGTTGAAGTTATTTGA 1599
> AT5G44440.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17910557-17912312 REVERSE LENGTH=1756
Length=1756
Score = 407 bits (220), Expect = 2e-112
Identities = 1090/1494 (73%), Gaps = 124/1494 (8%)
Strand=Plus/Plus
Query 180 CAAGAGTCATACACAC-ACCAAACGACACTT-CTTTCTCCTCTGTCTTAGCGTCATCAAT 237
||| |||||||||||| ||||| ||| ||| |||| | || | || | || || ||
Sbjct 155 CAA-AGTCATACACACTTCCAAA-GACTCTTCCTTT-TTTTCCATATTGGATTCTTCGAT 211
Query 238 ACAGAATCCAAGATTCTCTG-CTCCTGATACACCTAAACCGGTTTTAATCCTAACTCCGG 296
||| |||||||||||||| | ||| || |||||||||||||| | |||| | ||||| |
Sbjct 212 ACAAAATCCAAGATTCTCGGTTTCC-GAAACACCTAAACCGGTCTCAATCATCACTCCCG 270
Query 297 TTCAA-CCTTCCGATGTTCAATCAGCGGTTAAATGCGCAC-GCCGGTTCGATATCCACAT 354
|| || || || |||||| | | | | | |||||||| || | | || || || |
Sbjct 271 TTAAAGCC-AGTGACGTTCAAACTGTGATCAGATGCGCACAGCTGCATGGA-ATTCATGT 328
Query 355 CAGAACCCGAAGCGGAGGACAC-GATTACGAAGGACTCTCTTACGTTAC---CCGCAAAC 410
|| || || |||| || ||| | |||||||| ||||||||| || | | |||||
Sbjct 329 AAGGACTCGGAGCGCCGGTCACTG-CTACGAAGGTCTCTCTTACATTGCGTACAACAAAC 387
Query 411 CCTTCG-TAATCCTCGATTTAAGAAACCTCCGGTCTATCA-CAATT-GACGTCGATAACC 467
| |||| | || |||||||||| || || |||||||| | | ||| ||||| |||||||
Sbjct 388 CATTCGCT-GTCATCGATTTAAGGAATCTTCGGTCTAT-ATC-ATTAGACGTTGATAACC 444
Query 468 GGTC-GGTTTGGGTCCAAACCGGAGCCAC-GATCGGTGAA--CTATTCTGCGAAATCGGC 523
|| | || |||||||||||||||||| || | | || ||| |||| | || || ||
Sbjct 445 GGACAGG-TTGGGTCCAAACCGGAGCAACGGCT-GGGGAATTGTATTAT--GAGATTGG- 499
Query 524 AAAAAGAATCGAA-CT-TTAGCGTTCCCCGCCGGTGTTTGCCCCACCGTAGGCGTCGGAG 581
|||| | | || || || || ||||| |||||| || ||| ||||| || || || |
Sbjct 500 GAAAACCACCAAATCTCTT-GCTTTCCCGGCCGGTATTCACCCAACCGTTGGTGTAGGCG 558
Query 582 GACACTTCAGCGGCGGAGGCTACGGTACTTTACTGAGAAAATACGGTTTGGCAGCCGATC 641
|||| || ||||| || || || || || || || || ||||||||||| || || |||
Sbjct 559 GACAATTTAGCGGTGGTGGTTATGGCACATTGCTAAGGAAATACGGTTTAGCTGCGGATA 618
Query 642 ACGTGATAGACGCACGTGTTGTCGATGC-ACGAGGGAGGATTCTTGAAAGACGAG-AGAT 699
|| | || || |||| ||| || || || | | |||||||||||||| ||| || | ||
Sbjct 619 ACATAATCGATGCACTTGTGGTTGACGCGA-GTGGGAGGATTCTTGACCGACAAGCA-AT 676
Query 700 GGGTGAAGATTTCTTCTGGGCGATTCGTGGAGGTGGTGGATCAAGCTTTTGCGTTGTACT 759
||| || |||| ||| ||||| ||||||||||| || ||||||||||| | ||| ||||
Sbjct 677 GGGCGAGGATTACTTTTGGGCTATTCGTGGAGGGGGCGGATCAAGCTTCGGTGTTATACT 736
Query 760 TTCATGGAAGATCGGTTTAATCAATGTTCCATCAACAGTAACTGTCTTCAACGT-CACG- 817
|| |||||| | ||| || |||||||||| ||| | || || || || || || |
Sbjct 737 ATCGTGGAAGGTTAAATTAGTCGATGTTCCATCCACAATTACCGTGTTTAAAGTCCA-GA 795
Query 818 AAA-TTCTCAGAACAGAGTTCTTTAAAGATCATTC-ATCGTTGGCAATTTG-TGTCTGAT 874
||| || |||| |||| | || | ||||| || | ||||||| || || | |||
Sbjct 796 AAACATCGAAGAA-AGAGGCCGTT-AGGATCA-TCAAGAAATGGCAATATGCTG-CAGAT 851
Query 875 -AGAG-TCTCTGATGAT-TTATTCA-TACGAGTTATGTTGCAGAGAT---ACAAGAACAT 927
|| | || |||||||| || |||| || || | ||| |||||| ||||||||
Sbjct 852 AAG-GTTC-CTGATGATCTT-TTCATTAGGA-CAACATTGGAGAGATCAAACAAGAACGC 907
Query 928 GGTTCGA-GCTTCGTTTC-CGGGTTTGTATCTTGGTTCGGTTAACAATCTGTTGAAAATG 985
|| | | |||| | ||| | || | ||| ||||| |||| |||||||| ||| ||
Sbjct 908 AGTAC-ACGCTTTG-TTCACTGGACTATATATTGGTCCGGTGAACAATCTATTGGCGTTG 965
Query 986 GT-AAACCGGGAA-TTTCCTGAATTGGGT-TTGGAGGAAGATGATTGTCAAGAGATGAGT 1042
| || | || ||||| ||| | ||| || ||| |||| | |||| |||||||||||
Sbjct 966 ATGGAA--GAAAAGTTTCCGGAACTAGGTCTT-GAGAAAGAAGGTTGTGAAGAGATGAGT 1022
Query 1043 TGGATTGAGTCTGTGGTTTGGTTTGCTGA-GT---TAGGAGAAGAACCGATCGATGTTCT 1098
|||||||||||||| | ||||||||||| | || || |||| | | | ||||||
Sbjct 1023 TGGATTGAGTCTGTACTCTGGTTTGCTGATTTCCCTA-AAGGAGAATCTCTTGGTGTTCT 1081
Query 1099 TA-GTAAACGTACA-CG-AGCGTCGT-TAGCTTTC-AAGGCTAAATCTGATTTTGTTCAA 1153
| | || ||| | || | | || | || ||||| ||||| ||| ||||||||| |||
Sbjct 1082 CACG-AATCGT-GAGCGTA-CATC-TCTATCTTTCAAAGGC-AAAGATGATTTTGTCCAA 1136
Query 1154 GAACC-ACTGCCTGAAACCGCGATTTCAA-ATTTGTGGAGACGGTT-GCAAGAACCGGAA 1210
||||| | | || || | || | ||||| | | ||||| || || | ||| || ||
Sbjct 1137 GAACCGA-TACCCGAGGCTGC-AATTCAAGAGATATGGAGGCGATTAG-AAGCCCCCGAG 1193
Query 1211 GC-AGAGCATGCTCAGCTAATTTTCACTCCATTTGGTGGTAAAATGAGTGAGATTGCGGA 1269
|| | || || || | || || |||||||||||||| ||||||||||| || || ||
Sbjct 1194 GCTCG-GCTTGGAAAGATCATATTAACTCCATTTGGTGGGAAAATGAGTGAAATGGCAGA 1252
Query 1270 TTACGAGACGCCATTTCCGCATCGAAAG-GGGAATATAT-TCGAGATTCAGTATCTGAAT 1327
||||| || ||||| || ||||| | | |||||| | | | |||||||||||| || |
Sbjct 1253 GTACGAAACACCATTCCCACATCG-AGGAGGGAATCTCTAT-GAGATTCAGTATGTGGCT 1310
Query 1328 TACT---G-G-AGAGG-AGAC--G-TGAA-A--GAGA-AG-T--ATA--TGAGATGGGTG 1369
|||| | | ||||| |||| | || | |||| || | ||| ||| ||||||
Sbjct 1311 TACTGGAGAGAAGAGGAAGACAAGAACAAGACGGAGACAGATAAATATCTGAAATGGGTC 1370
Query 1370 GAGAGAGTTTACG-ATGATATGAGT-GAGTTTGTGGCGAGTTCTCCGAGAGGAGCTTATA 1427
|| || ||||||| || ||||| | | | ||| ||| ||||| ||||||||||||
Sbjct 1371 GATAGCGTTTACGAAT-TTATGACTCCA-TATGTTTCGAAATCTCCAAGAGGAGCTTATG 1428
Query 1428 TAAATCTC-AGAGATCTTGATTTGGGGATGTATGTTGG-AGGTAAGAGGAGTAAGTACGA 1485
| ||| || || ||| | |||||||| |||||| |||| | | |||| || ||||||||
Sbjct 1429 TCAATTTCAAG-GATATGGATTTGGGTATGTATCTTGGAAAG-AAGAAGACAAAGTACGA 1486
Query 1486 GGAAGGAAAGAGTTGGGGAGTGAAGTATTTTAA-AGGTAATTTCGAGAGATTGGTGAGGG 1544
|||||||||||||||||||||||||||||| || | |||||||||||||||||||| |
Sbjct 1487 GGAAGGAAAGAGTTGGGGAGTGAAGTATTTCAAGAAC-AATTTCGAGAGATTGGTGAGAG 1545
Query 1545 TTAAGACAAGTGTTGATCCTTTTGATTTCTTCTGTGATGAACAGAGTATTCCTC 1598
| ||||| || |||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1546 TGAAGACTAGGGTTGATCCAACAGATTTCTTCTGCGATGAACAGAGCATTCCTC 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5