BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946115
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20340.1 | Symbols: | Transcription factor TFIIE, alpha sub... 422 3e-117
AT4G20810.1 | Symbols: | transcription initiation factor IIE (... 418 5e-116
AT1G03280.1 | Symbols: | Transcription factor TFIIE, alpha sub... 375 3e-103
> AT4G20340.1 | Symbols: | Transcription factor TFIIE, alpha subunit
| chr4:10984707-10987748 FORWARD LENGTH=1547
Length=1547
Score = 422 bits (228), Expect = 3e-117
Identities = 349/404 (86%), Gaps = 22/404 (5%)
Strand=Plus/Plus
Query 25 AAGAAAAAGTTCAAACACGAACTAGAAGATAAG-GATAATGTTCAAGAGTATGGAC-GTC 82
||||||||||||||| | ||||||||||| || ||| |||||| |||||||| | |||
Sbjct 567 AAGAAAAAGTTCAAAGATGAACTAGAAGA-CAGAAATACTGTTCAGGAGTATGG-CTGTC 624
Query 83 CTAACTGCAAAAGAAAATATAGTGCACTGGATGCTCTGAGATTATTTTCTATGGAAGGCG 142
||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||
Sbjct 625 CTAACTGCAAAAGAAAATATAATGCACTGGATGCCCTGAGATTAATTTCTATGGAAGACG 684
Query 143 ATTCTTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAACTT 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 685 ATTCTTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAATTT 744
Query 203 CCCAAGAAGTACTAGTAGATGGAAGTGACAATGCAAGGAGACGGC-G-GG-ATCATCTAA 259
|| |||||||| |||||| || ||||||||||||||||||||| | || | | |||
Sbjct 745 CCGAAGAAGTA---GTAGATAGAGGTGACAATGCAAGGAGACGGCAGCGGGAGAAAGTAA 801
Query 260 AAGATTTG-CTTCAG-ATTATGGAAGTTCGA-CTGAAACCTCTGATGGATCATA-TAAAC 315
||| |||| |||||| ||| |||| | | || |||||||| |||||||| | || ||||
Sbjct 802 AAG-TTTGGCTTCAGGATT-TGGAGGGT-GAACTGAAACCCCTGATGGAAC-TAATAAAT 857
Query 316 AGAATAAAAGACCTACCGGTTCC-TAGC-TTTGAATCTTTTCCGGCATGGGAGGCTCGTG 373
||| |||||||||||||| |||| | || |||||| |||||||||||||||| |||||||
Sbjct 858 AGAGTAAAAGACCTACCG-TTCCCT-GCCTTTGAACCTTTTCCGGCATGGGAAGCTCGTG 915
Query 374 CAGCTACGTATGCTCGTGAAAATGGTGATCGTAATTCTGATGAT 417
|||||| | ||||||||||||||||||| ||| ||||||||
Sbjct 916 CAGCTAAGGCTGCTCGTGAAAATGGTGATTTTAACCCTGATGAT 959
> AT4G20810.1 | Symbols: | transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general transcription
factor TFIIE family protein | chr4:11141427-11143597 REVERSE
LENGTH=1251
Length=1251
Score = 418 bits (226), Expect = 5e-116
Identities = 256/271 (94%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 147 TTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAACTTCCCA 206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 444 TTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAACTTCCGA 503
Query 207 AGAAGTACTAGTAGATGGAAGTGACAATGCAAGGAGACGGCGGGATCATCTAAAAGATTT 266
||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 504 AGAAGTAGTAGTAGATGGAAGTGACAATCCAAGGAGTCGGCGGGATCATCTAAAAGATTT 563
Query 267 GCTTCAGATTATGGAAGTTCGACTGAAACCTCTGATGGATCATATAAACAGAATAAAAGA 326
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GCTTCAGAATATGGAGGTTCGACTGAAACCTCTGATGGATCATATAAACAGAATAAAAGA 623
Query 327 CCTACCGGTTCCTAGCTTTGAATCTTTTCCGGCATGGGAGGCTCGTGCAGCTACGTATGC 386
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||
Sbjct 624 CCTACCGGTTCCTAGCTTTGAATCTTTTCCGGCATGGGAGACTCGTGTAGCTAAGGCTGC 683
Query 387 TCGTGAAAATGGTGATCGTAATTCTGATGAT 417
||||||||||||||| | ||| ||||||||
Sbjct 684 TCGTGAAAATGGTGACCTTAACCCTGATGAT 714
Score = 243 bits (131), Expect = 3e-63
Identities = 242/291 (83%), Gaps = 26/291 (9%)
Strand=Plus/Plus
Query 541 GGA-AATGGTGTTGATGATAAGG-ATTTGAAGAATGAATATATCAAAGGGTACTTGGCCG 598
||| ||||||| ||||||| ||| |||||||| |||| ||| |||||| |||| || |
Sbjct 948 GGAGAATGGTGATGATGAT-AGGAATTTGAAGGATGAGTATCTCAAAGCTTACTACGCGG 1006
Query 599 CTAAACTGGAGCAGCATGAGCTAGCTGAAAAGCTGAATCAGCAAGAATCCGCAGGCCAA- 657
||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1007 CTATACTGGAGGAGCAAGAGCTAGCTGAAAAGCTGAATCAGCAAGAATCCGCAGGCAAAG 1066
Query 658 TCAACAACCACTGACATTGAATTGGCTACTACATCCTCAGATCTTCAGGTTGGTATGAAG 717
| |||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1067 T-AACAAC---TGACATTGAATTGGCTACTTCATCCTCAGATCGTCAGGTTGGTATGAAG 1122
Query 718 TGTAAACGTGAAGAGGAAGATGAAGAAGATGTTGCATGGGGAGAAACGTTTAATGTTTCA 777
| ||||||||||||||||| |||||||| | | | || |||| ||
Sbjct 1123 TCCAAACGTGAAGAGGAAGAAGAAGAAGA------A-G--------C-TTC--TGTTGCA 1164
Query 778 GCAAATGGAAACTACAAGGTGGACATGAATGTGGAAGCCGAAAAAGCAGAA 828
|||||||||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct 1165 GCAAATGGAAACTACAAGGTGGACTTGAATGTGGAAGCAGAAGAAGCAGAA 1215
> AT1G03280.1 | Symbols: | Transcription factor TFIIE, alpha subunit
| chr1:803035-807066 FORWARD LENGTH=1901
Length=1901
Score = 375 bits (203), Expect = 3e-103
Identities = 342/407 (84%), Gaps = 18/407 (4%)
Strand=Plus/Plus
Query 20 GGATGAAGAAAAA-GTTCAAACACGAACTAGAAGATAAGGATAATGTTCAAGAGTATGGA 78
||||||| ||||| | ||||| | || |||||||||||| ||| |||||| ||||||||
Sbjct 596 GGATGAA-AAAAAGGCTCAAAGATGAGCTAGAAGATAAGAATACTGTTCAGGAGTATGG- 653
Query 79 C-GTCCTAACTGCAAAAGAAAATATAGTGCACTGGATGCTCTGAGATTATTTTCTATGGA 137
| ||||||||||| |||| ||||||| ||| |||||||||||||||||| |||||||||
Sbjct 654 CTGTCCTAACTGCCAAAGGAAATATAATGCGCTGGATGCTCTGAGATTAATTTCTATGGT 713
Query 138 AGGCGATTCTTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCT 197
|| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 714 AGACGATTCTTTTCATTGTGAAAATTGCAATGGTGAACTTGTTGTGGAATGCAACAAGCT 773
Query 198 AACTTCCCAAGAAGTACTAGTAGATGGA-AGTGACAATGCAAGGAGACGGCGG-G--ATC 253
||||||| |||||||| | | |||||| | ||| |||||||||||||||||| | |
Sbjct 774 AACTTCCGAAGAAGTAGT--T-GATGGAGA-TGATAATGCAAGGAGACGGCGGCGGGAAA 829
Query 254 ATCTAAAAGATTTGCTTCAGATTAT-GGAAGTTCGACTGAAACCTCTGATGGATCA-TAT 311
| |||||| || ||||||||| || ||| |||| | ||||||||||||||||||| | |
Sbjct 830 ACCTAAAAAATATGCTTCAGAA-ATTGGAGGTTCAAATGAAACCTCTGATGGATCAGT-T 887
Query 312 AAACAGAATAAAAGACCTACCGGTTCCT-AGCTTTGAATCTTTTCCGGCATGGGAGGCTC 370
||| ||| ||||||||||||| | ||| | |||| |||||||| |||||||||||| |
Sbjct 888 AAATAGAGTAAAAGACCTACCAATACCTGAA-TTTGGATCTTTTCTGGCATGGGAGGCCC 946
Query 371 GTGCAGCTACGTATGCTCGTGAAAATGGTGATCGTAATTCTGATGAT 417
||||||| | | |||||| || |||||||||| ||| || |||||
Sbjct 947 GTGCAGCGATGGCTGCTCGCGAGAATGGTGATCTTAACCCTAATGAT 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5