BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946121
Length=2240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20740.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 3347 0.0
> AT4G20740.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:11126151-11128334 FORWARD LENGTH=2184
Length=2184
Score = 3347 bits (1812), Expect = 0.0
Identities = 2076/2202 (94%), Gaps = 24/2202 (1%)
Strand=Plus/Plus
Query 23 ATGAAATCACCAAAACCTCCGAATCTCTCTGATAAATCTCTTAAACCCAATTTCTTCTAC 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAAATCACCAAAACCTCCGAATCTCTCTGATAAATCTCTTAAACCCAATTTCTTCCAC 60
Query 83 GGCCACCGTAAACCGTCACAAAACCGCCCAATC-GTATACGGTGGTCTCTTCT-CAACCC 140
|| |||||||| ||||||||||||||||||| | || |||||||||||||||| ||| ||
Sbjct 61 GGACACCGTAAGCCGTCACAAAACCGCCCAA-CTGTCTACGGTGGTCTCTTCTCCAA-CC 118
Query 141 GCCAATCTCTATCCAGAGACTCACCCCAATCTCCATCAAACGCCGTCGCTCACCGAACAC 200
|||||||| || |||||| |||||||||| | | ||| ||| || |||||||||||||||
Sbjct 119 GCCAATCTATACCCAGAGTCTCACCCCAACCACAATCCAACTCCCTCGCTCACCGAACAC 178
Query 201 CTTTCGATCTCCGCAAATGGGATCCAGAAACCCATCTCCCTTCAGAAAGATCTCCTTCTT 260
|||||||||||||||||||||||||||||||||||||||| || || | |||
Sbjct 179 CTTTCGATCTCCGCAAATGGGATCCAGAAACCCATCTCCC-TC--------CT-C--CTT 226
Query 261 CTCCGCAGTCACATTCCACGGTGATCTCCGCCGCCTCCGAACGTTTATCTCCGATCGCGA 320
|||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 227 CTCCGCCGTCACATTCCACGGTGATCTCCGCCGCCTCCGAGCGTCTATCTCCAATCGCGA 286
Query 321 GATTCGTCCTCGACGCATTCCGCAAGAATCGTAACCATTGGGGTCCCTCAGTAGTCTCGG 380
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |
Sbjct 287 GATTCGTCCTCGACGCATTCCGTAAGAACCGTAACCATTGGGGTCCCTCAGTGGTCTCCG 346
Query 381 AGCTAAACAAACTCCGCCGTGTAACGCCGAGTATCGTCGCCGAGGTTTTGAAATTAGGAA 440
||||||||||||||||||| || || || |||||||||||||||||||||||| |||| |
Sbjct 347 AGCTAAACAAACTCCGCCGCGTCACACCAAGTATCGTCGCCGAGGTTTTGAAACTAGGTA 406
Query 441 ACGATGCTACAGCT-GCGGCTAAGTTCTTTCATTGGGCTGGTAAACAAAAAGGGTACAAA 499
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 407 ACGATGCTGCAG-TCGCGGCTAAGTTCTTTCATTGGGCTGGTAAACAAAAAGGGTATAAA 465
Query 500 CACGATTTCGCTGCTTACAATGCTTTTGCTTATTGCCTTAATCGAAACGGACATTTTCGT 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CACGATTTCGCTGCTTACAATGCTTTTGCTTATTGCCTTAATCGAAACGGACATTTTCGT 525
Query 560 GCTGCGGATCAATTGCCTGAGCTTATGGATTCTCAGGGAAGACCACCGTCGGAGAAACAG 619
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GCTGCGGATCAGTTACCTGAGCTTATGGATTCTCAGGGAAGACCACCGTCGGAGAAACAA 585
Query 620 TTTGAGATTTTGATTAGAATGCACGCGGATAACAGAAGAGGTTTAAGGGTTTATTACGTT 679
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 586 TTTGAGATTTTGATTAGAATGCACGCTGATAATAGAAGAGGTTTAAGGGTTTATTACGTT 645
Query 680 TACGAGAAGATGAAGAAGTTTGGGTTTAAGCCTAGGGTGTTCTTGTATAATAGGATAATG 739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 646 TACGAGAAGATGAAGAAGTTTGGGTTTAAGCCTAGGGTGTTCTTGTATAATAGGATTATG 705
Query 740 GATGCTTTGGTGAAAAATGGTTACTTTGATTTAGCTTTGGCTGTTTATGAGGATTTTAAA 799
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GATGCTTTGGTTAAAAATGGTTACTTTGATTTAGCTTTGGCTGTTTATGAGGATTTTAAG 765
Query 800 GAAGATGGGTTGGTGGAGGAGAGTACTACTTTCATGATCTTGGTTAAAGGGTTGTGTAAA 859
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 766 GAAGATGGGTTGGTGGAGGAGAGTACTACTTTTATGATCTTGGTTAAAGGGTTGTGTAAA 825
Query 860 GCAGGTAGAATCGAAGAAATGCTCGAGATTTTGCAGAGAATGAGGGAGAATTTGTGTAAG 919
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 826 GCAGGTAGGATCGAGGAAATGCTTGAGATTTTGCAGAGAATGAGGGAGAATTTGTGTAAG 885
Query 920 CCTGATGTTTTTGCTTACACAGCAATGATCAAGACTTTGGTTTCTGAAGGGAACTTGGAT 979
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 886 CCTGATGTTTTTGCTTACACGGCTATGATCAAGACTTTGGTTTCTGAAGGGAACTTGGAT 945
Query 980 GCAAGTTTACGAGTTTGGGATGAAATGAAACGCGATGAGATAAAACCGGATGTGATGGCG 1039
||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 946 GCAAGTTTACGAGTTTGGGATGAGATGAGACGGGATGAGATAAAACCGGATGTGATGGCG 1005
Query 1040 TATGGAACACTTGTTGTGGGTCTGTGTAAAGACGGTAGAATTGAAAGAGGCTATGAATTG 1099
||||||||||||||||||||| |||| || ||||||||| |||||||||||||||| |||
Sbjct 1006 TATGGAACACTTGTTGTGGGTTTGTGCAAGGACGGTAGAGTTGAAAGAGGCTATGAGTTG 1065
Query 1100 TTTATGGAGATGAA-GGGAAAGCAGATTTTGATTGATAGGGAGATCTACAGGGTTTTAAT 1158
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1066 TTTATGGAGATGAAGGGGAAA-CAGATTTTGATTGATAGGGAGATCTACAGGGTTTTGAT 1124
Query 1159 TGAAGGGTTTGTTGCGGATGGGAAGGTCAGATCTGCTTGCGATCTGTGGAAGGATCTGGT 1218
|||||| ||||| |||||||||||||| |||||||||||| |||||||| ||||||| ||
Sbjct 1125 TGAAGGATTTGTAGCGGATGGGAAGGTTAGATCTGCTTGCAATCTGTGGGAGGATCTTGT 1184
Query 1219 GGATTCTGGGTACATAGCTGATCTAGGGATATACAATGCTGTTATTAAAGGTTTATGTAG 1278
|||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct 1185 GGATTCTGGGTATATAGCTGATATAGGGATATACAATGCAGTTATTAAAGGGTTATGTAG 1244
Query 1279 TGTGAATCAGGTTGATAAAGCATATAACCTCTTCCAAGTTGCAATTGAGGAAGAACTAGA 1338
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1245 TGTGAACCAGGTTGATAAAGCATATAAGCTCTTCCAAGTTGCAATTGAGGAAGAACTAGA 1304
Query 1339 ACCAGATTTTGAGACTCTAAGTCCCATTATGGTTGCATATGTGGTGATGAATAGACTAAG 1398
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1305 ACCAGATTTTGAGACTCTAAGTCCCATTATGGTTGCTTATGTTGTGATGAATAGACTGAG 1364
Query 1399 TGATTTCTCCAATTTGCTAGAACGAATTGGAGAATTAGGACACCCTGTCACAGATTACCT 1458
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1365 TGATTTCTCCAATGTGCTAGAACGAATTGGAGAATTAGGATACCCTGTCTCAGATTACCT 1424
Query 1459 TACACAATTTTTTAAATTGTTATGTGCTGACGAAGAAAAGAGA-ACGATGGCTTTAGATG 1517
||||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||
Sbjct 1425 TACACAATTTTTTAAATTGTTGTGTGCTGATGAAGAAAAGA-ATGCGATGGCTTTAGATG 1483
Query 1518 TCTTTGATATACTAAAGACTAAAGGTCATGGCAGTGTCTCTGTGTACAACATTCTTATGG 1577
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 TCTTTTATATACTAAAGACTAAAGGTCATGGCAGTGTCTCTGTGTACAACATTCTTATGG 1543
Query 1578 AAGCTCTTTACAAGATCGGTGATATTCAAAAGTCCTTGTCACTTTTCTATGAAATGAGGG 1637
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 AAGCTCTTTACAAGATGGGTGATATTCAAAAGTCCTTGTCACTTTTCTATGAAATGAGGA 1603
Query 1638 AATTTGGGTTTGAACCAGATTCATCATCTTACAGTATTGCACTTTGCTGCTTTGTTGACA 1697
|| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 1604 AACTTGGGTTTGAACCAGATTCATCATCTTACAGTATTGCAATTTGCTGTTTTGTTGAGA 1663
Query 1698 AAGGGGATGTCCAAGAGGCTTGTTCATGTCATGAAAAAATCATTGAGATGTC-TCGTGTT 1756
||||||||||| ||| ||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 1664 AAGGGGATGTCAAAGCGGCTTGTTCATTTCATGAAAAAATCATTGAGATGTCGT-GTGTT 1722
Query 1757 CCTTCCAAAGCTGCTTATTTGTCTCTTACTAAAGGACTCTGCCAAATTGGAGAAATTGAT 1816
||||||| |||||| ||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1723 CCTTCCATAGCTGCGTATCTGTCTCTCACTAAAGGTCTCTGCCAAATTGGAGAAATTGAT 1782
Query 1817 GCGGTGATGTTATTAGTCCGTGAATGTCTAGGAAACGTTCAAAGTGGTCCTATGGAGTTT 1876
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1783 GCGGTGATGTTATTAGTCCGTGAATGTCTAGGAAATGTTGAAAGTGGTCCTATGGAGTTT 1842
Query 1877 AAGTACGTTCTTAGGGTTTGTCATGTATGCAAAGGTAGTAATGCCGAGAAGGTTATGGAG 1936
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1843 AAGTACGCTCTTACGGTTTGTCATGTATGCAAAGGTAGTAATGCCGAGAAGGTTATGAAG 1902
Query 1937 GTAGTAGATGAGATGAACCAGGAAGGTGTCTCTATCAATGAAGTTATATACTGTGCAATT 1996
|| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1903 GTGGTAGACGAGATGAACCAGGAAGGTGTCTTTATCAATGAAGTTATATACTGTGCGATT 1962
Query 1997 ATCTCTGGTATGTCTAAGCATGGAACAATAAAAGCAGCAAGAGAAGTCTTTGCAGAGCTG 2056
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1963 ATCTCTGGTATGTCTAAGCATGGAACAATAAAAGTAGCAAGAGAAGTCTTTACAGAGCTG 2022
Query 2057 AAAAAGCGCAAAGTCATGACTGAGGCTGACATGGTAGTCTATGATGAAATGTTAATTGAG 2116
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 2023 AAAAAGCGCAAAGTCATGACAGAGGCTGATATGGTAGTCTATGAGGAAATGTTAATTGAG 2082
Query 2117 CAGACAAAGAAGAAGACAGCTGATTTGGTGCTTTCAGGGATCAAGTTTTTTGGTCTCGAA 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 CAGACAAAGAAGAAGACAGCTGATTTGGTGCTTTCAGGGATCAAGTTTTTTGGTCTCGAA 2142
Query 2177 TCAAAACTAAGAGCAAAGGGTTGCAGACTACTCGATAACTAA 2218
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 TCAAAACTAAGAGCAAAGGGTTGCAGACTACTCGATAACTAA 2184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111144006630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5