BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946123

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G20450.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   300    1e-80


> AT4G20450.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr4:11024054-11029008 REVERSE LENGTH=2697
Length=2697

 Score =  300 bits (162),  Expect = 1e-80
 Identities = 228/257 (89%), Gaps = 15/257 (6%)
 Strand=Plus/Plus

Query  250   TAAACTTGAGTGGGAACAATCTTAGCGGCTCAATTCCTCAAAGCCTTCGT-AACATGGCA  308
             |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct  1448  TAAACTTGAGTGGGAACAATCTTAGCGGCTCAATTCCTCAAAGCCTTC-TCAACATGGAA  1506

Query  309   AACAATGGGCTAA---CGTTGCTCGC-TAATGGAAATCCAAACCTCTGTTTGGATCCATC  364
             || ||||||||||   ||||||| |  ||||||||||  || ||||||||||||||||||
Sbjct  1507  AAGAATGGGCTAATAACGTTGCT-GTATAATGGAAAT--AA-CCTCTGTTTGGATCCATC  1562

Query  365   GTGCGAAAGTGAAGCTGGTCATGGAAACAACATAAAGAAATTGCTAGTACCTATTCTTGC  424
              |||||||||||| |||||| ||| || |||| |||||||||||||||||||||||||||
Sbjct  1563  ATGCGAAAGTGAAACTGGTCCTGGGAATAACAAAAAGAAATTGCTAGTACCTATTCTTGC  1622

Query  425   ATCAGCTGCTTCTGTTGGTATTATTACAGCTGTGCTTCTTCTCATCA---TTCTCTT-CT  480
             ||||||||||||||| || ||||||| |||||||||||||||| |||   ||||||| ||
Sbjct  1623  ATCAGCTGCTTCTGTGGGAATTATTATAGCTGTGCTTCTTCTCGTCAACATTCTCTTACT  1682

Query  481   TTAGAAAGAAGAGGCCA  497
             | |||||||||| ||||
Sbjct  1683  T-AGAAAGAAGAAGCCA  1698


 Score =  233 bits (126),  Expect = 1e-60
 Identities = 167/186 (90%), Gaps = 6/186 (3%)
 Strand=Plus/Plus

Query  1     ACTACAGTCCTCTAGAGTTCATGGCTGACACTGTACCTATCAGAACCTCTACTAAATGCG  60
             |||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct  974   ACTACAGTCCTCTAGAGTTCATGGCTGACACTGTACCTATAAGAACCTCGAGTAAATGCG  1033

Query  61    ATGTT-A-G-TT---GCTCCCTAGATCTTACAAGAACTAAGTCGTCAACTCTTCCACCAT  114
              ||   | | ||   ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1034  GTGACGATGGTTTCTGCTCCCTAGATCTCACAAGAACTAAGTCGTCAACTCTTCCACCAT  1093

Query  115   CTTGTAATGCCATAGAGGTTTTCGGGGTACTCCAGCTTCTTCAGTCCGAAACAGATAAAA  174
              ||||||||| || |||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct  1094  ATTGTAATGCGATGGAGGTTTTCGGGTTACTCCAGCTTCTTCAGACCGAAACAGATGAAA  1153

Query  175   ACGACG  180
             ||||||
Sbjct  1154  ACGACG  1159



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5