BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946126 Length=469 Score E Sequences producing significant alignments: (Bits) Value AT4G20420.1 | Symbols: | Tapetum specific protein TAP35/TAP44 ... 584 2e-166 > AT4G20420.1 | Symbols: | Tapetum specific protein TAP35/TAP44 | chr4:11016970-11017623 FORWARD LENGTH=654 Length=654 Score = 584 bits (316), Expect = 2e-166 Identities = 410/454 (90%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 7 CAAATTCAGCTACAATGTCAATCTCAAGAGTTTGTCTCTGCT-TAATCTTTCTCACAATC 65 |||| ||||||||||||||||| |||||||||| |||||| | |||||||||||||| || Sbjct 58 CAAAATCAGCTACAATGTCAATTTCAAGAGTTTATCTCTG-TCTAATCTTTCTCACATTC 116 Query 66 GTC-GCTTCCCCACTTGTGATCTGCTCTCGCAGCCCGAAACTCGCAGCACCATCAGCTGT 124 ||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||| | Sbjct 117 GTCAG-TTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCAGCATCAGCAG- 174 Query 125 C-ATAGGGAAGAAGCTTGGGAAAGGACATGTTCATTCTCCCGCAATGCTTGTTTCTGAA- 182 | ||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||| Sbjct 175 CAATAGGGAAGAAGCATGGGAAAGAACATGTTCATTCTCCGGCAATGCTTTTTTCTGAAT 234 Query 183 TCACCCAAGGTTGATTCATCATCCTCCATGATCA-AGATTGATGAGCCTGCAACAAACTC 241 || || ||||||||||||||||||||||||| || | |||||||||||||||||||| || Sbjct 235 TC-CCGAAGGTTGATTCATCATCCTCCATGA-CACATATTGATGAGCCTGCAACAAAGTC 292 Query 242 TGCCATAGCCGGTTTTTTCAGGTATAGGTTCCCATTCCAAGGCTGGCCTTTCCACAAGTA 301 ||| ||||||||||||||||||||||| | |||||||| || ||||||||||||||||| Sbjct 293 TGCAATAGCCGGTTTTTTCAGGTATAGACTACCATTCCAGGGATGGCCTTTCCACAAGTA 352 Query 302 TGCTCCTTTTCCAATGGGTACGCCTACGAATCCTTCC-TCCCCCGTAAGTGCAACACCAT 360 ||||||||| ||||||||||| ||||||||||||||| | || |||| | ||||||| | Sbjct 353 TGCTCCTTTCCCAATGGGTACACCTACGAATCCTTCCGT-TCCTGTAACTTCAACACCGT 411 Query 361 CTTCTGGATCTGCTGCTGCTGAGGAAGAGGAATCCGAGAAGGTGCCTTCTTCGCCAAGCA 420 |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 412 CTTCTGGAGCTGCTGCTGCTGAGGAAGAGGAAACCGAGAAGGTGCCTTCTGCGCCAAGCA 471 Query 421 AAGGAAACAGAGATGGAGGCAACGCGTAGTGAAT 454 |||||||||||||||||||||| ||||| ||||| Sbjct 472 AAGGAAACAGAGATGGAGGCAATGCGTAATGAAT 505 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22303961268 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5