BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946126
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20420.1 | Symbols: | Tapetum specific protein TAP35/TAP44 ... 584 2e-166
> AT4G20420.1 | Symbols: | Tapetum specific protein TAP35/TAP44
| chr4:11016970-11017623 FORWARD LENGTH=654
Length=654
Score = 584 bits (316), Expect = 2e-166
Identities = 410/454 (90%), Gaps = 12/454 (3%)
Strand=Plus/Plus
Query 7 CAAATTCAGCTACAATGTCAATCTCAAGAGTTTGTCTCTGCT-TAATCTTTCTCACAATC 65
|||| ||||||||||||||||| |||||||||| |||||| | |||||||||||||| ||
Sbjct 58 CAAAATCAGCTACAATGTCAATTTCAAGAGTTTATCTCTG-TCTAATCTTTCTCACATTC 116
Query 66 GTC-GCTTCCCCACTTGTGATCTGCTCTCGCAGCCCGAAACTCGCAGCACCATCAGCTGT 124
||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 117 GTCAG-TTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCAGCATCAGCAG- 174
Query 125 C-ATAGGGAAGAAGCTTGGGAAAGGACATGTTCATTCTCCCGCAATGCTTGTTTCTGAA- 182
| ||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct 175 CAATAGGGAAGAAGCATGGGAAAGAACATGTTCATTCTCCGGCAATGCTTTTTTCTGAAT 234
Query 183 TCACCCAAGGTTGATTCATCATCCTCCATGATCA-AGATTGATGAGCCTGCAACAAACTC 241
|| || ||||||||||||||||||||||||| || | |||||||||||||||||||| ||
Sbjct 235 TC-CCGAAGGTTGATTCATCATCCTCCATGA-CACATATTGATGAGCCTGCAACAAAGTC 292
Query 242 TGCCATAGCCGGTTTTTTCAGGTATAGGTTCCCATTCCAAGGCTGGCCTTTCCACAAGTA 301
||| ||||||||||||||||||||||| | |||||||| || |||||||||||||||||
Sbjct 293 TGCAATAGCCGGTTTTTTCAGGTATAGACTACCATTCCAGGGATGGCCTTTCCACAAGTA 352
Query 302 TGCTCCTTTTCCAATGGGTACGCCTACGAATCCTTCC-TCCCCCGTAAGTGCAACACCAT 360
||||||||| ||||||||||| ||||||||||||||| | || |||| | ||||||| |
Sbjct 353 TGCTCCTTTCCCAATGGGTACACCTACGAATCCTTCCGT-TCCTGTAACTTCAACACCGT 411
Query 361 CTTCTGGATCTGCTGCTGCTGAGGAAGAGGAATCCGAGAAGGTGCCTTCTTCGCCAAGCA 420
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 412 CTTCTGGAGCTGCTGCTGCTGAGGAAGAGGAAACCGAGAAGGTGCCTTCTGCGCCAAGCA 471
Query 421 AAGGAAACAGAGATGGAGGCAACGCGTAGTGAAT 454
|||||||||||||||||||||| ||||| |||||
Sbjct 472 AAGGAAACAGAGATGGAGGCAATGCGTAATGAAT 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22303961268
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5