BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946135
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase h... 2425 0.0
> AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase
homolog E1B | chr4:10989952-10991709 FORWARD LENGTH=1758
Length=1758
Score = 2425 bits (1313), Expect = 0.0
Identities = 1429/1484 (96%), Gaps = 11/1484 (1%)
Strand=Plus/Plus
Query 1 GCTCTCCAAATCCGTCTT-CCATGGCGATTTCGGCTCCAGCCGCTTGttcttcttcctct 59
||||||||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 64 GCTCTCCAATTCCATCTTCCCATGGCGATTTCGGCTCCAGCCGCTTGTTCTTCCTCCTCT 123
Query 60 agacttctctgttcctactcctctccttctccttctctctGTCCCGCCATTTCCACCTCT 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AGAATTCTCTGTTCCTACTCCTCTCCTTCTCCTTCTCTCTGTCCCGCCATTTCCACCTCT 183
Query 120 GGTAAGCTCAAAACCCTAACTCTCTCTTCCTCCTTCCTCCCTTCTTACTCATTAACCACT 179
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GGTAAACTCAAAACCCTAACTCTCTCTTCCTCCTTCCTCCCTTCTTACTCATTAACCACC 243
Query 180 ACCTCCGCTTCTCAATCCACTCGTCGCTCCTTCACCGTCCGCGCCGCTCGTGGAAAGTTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ACCTCCGCTTCTCAATCCACTCGTCGCTCCTTCACCGTCCGCGCCGCTCGTGGAAAGTTC 303
Query 240 GAGAGGAAGAAGCCTCATGTCAACATCGGAACCATCGGTCATGTTGACCATGGTAAGACT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 304 GAGAGGAAGAAGCCTCATGTCAACATCGGAACCATCGGTCATGTTGACCATGGGAAAACT 363
Query 300 ACTTTAACCGCAGCTCTCACCATGGCTCTTGCTTCAATTGGTTCCAGCGTCGCCAAAAAG 359
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 364 ACTTTAACCGCAGCTCTAACCATGGCTCTCGCTTCCATTGGTTCCAGCGTCGCTAAAAAG 423
Query 360 TACGACGAGATTGACGCTGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TACGACGAGATTGACGCTGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCT 483
Query 420 ACTGTGGAGTACGAGACTGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCT 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 ACTGTTGAGTACGAGACTGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCT 543
Query 480 GATTACGTTAAGAACATGATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTT 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GATTACGTTAAGAATATGATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTT 603
Query 540 TCCGGCGCCGACGGTCCTATGCCTCAGACTAAAGAGCATATCCTTTTGGCGAAGCAGGTT 599
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 604 TCCGGCGCCGATGGTCCTATGCCTCAGACTAAAGAGCATATCCTTTTGGCTAAGCAGGTT 663
Query 600 GGTGTTCCTGATATGGTTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAGTTG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GGTGTTCCTGATATGGTTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAGTTG 723
Query 660 TTAGAGCTCGTTGAGCTTGAGGTTCGTGAGCTTCTCTCGTCGTATGAATTTAACGGTGAT 719
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 724 CTAGAGCTCGTTGAGCTTGAGGTTCGTGAGCTTCTCTCGTCTTATGAATTTAACGGTGAT 783
Query 720 GATATTCCGATTATCTCTGGTTCTGCTCTTTTAGCTGTGGAGACTCTCACTGAGAATCCT 779
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 784 GATATTCCGATTATCTCTGGTTCTGCTCTTTTAGCCGTTGAGACTCTTACTGAGAATCCT 843
Query 780 AATGTGAAGAGAGGTGATAACAAATGGGTAGATAAGATTTATGAACTTATGGATGCTGTT 839
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AAGGTTAAGAGAGGTGATAACAAATGGGTAGATAAGATTTATGAACTTATGGATGCTGTT 903
Query 840 GATAG-TTACATCCCAATCCCTCAGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGA 898
||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GAT-GATTACATCCCTATCCCTCAGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGA 962
Query 899 GGATGTGTTCTCTATCACGGGACGTGGTACTGTGGCTACAGGGCGTGTCGAGAGAGGTAC 958
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 963 GGATGTGTTCTCTATCACTGGACGTGGTACGGTGGCTACAGGGCGTGTCGAGAGAGGTAC 1022
Query 959 GGTTAAGGTAGGAGAGACTGTAGATTTAGTTGGTTTAAGGGAAACTAGGAGCTACACAGT 1018
|||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||
Sbjct 1023 GGTTAAGGTAGGAGAGACTGTAGATTTAGTGGGTTTGAGGGAGACTAGGAGTTACACTGT 1082
Query 1019 CACTGGGGTTGAAATGTTTCAGAAGATTCTCGATGAGGCTTTAGCTGGTGACAATGTAGG 1078
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1083 CACTGGGGTTGAAATGTTTCAGAAGATTCTTGATGAGGCTTTAGCTGGTGACAATGTAGG 1142
Query 1079 GTTGTTGCTTAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 GTTGTTGCTTAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCC 1202
Query 1139 GGGATCGATTACTCCACATACCAAGTTTGAAGCAATTGTGTATGTGTTGAAGAAAGAAGA 1198
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 1203 GGGATCGATTACTCCACATACCAAGTTTGAAGCAATTATCTATGTGTTGAAGAAAGAGGA 1262
Query 1199 AGGTGGAAGGCATTCTCCATTCTTTGCAGGTTACAGGCCTCAGTTCTACATGAGGACGAC 1258
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1263 AGGTGGAAGGCATTCTCCATTCTTTGCAGGGTACAGGCCTCAGTTCTACATGAGGACGAC 1322
Query 1259 TGATGTTACAGGTAAAGTGACAAAGATCATGAACGACAAAGACGAAGAGTCGAAGATGGT 1318
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1323 TGATGTTACGGGTAAAGTGACGAAGATCATGAACGACAAAGATGAAGAGTCGAAGATGGT 1382
Query 1319 TATGCCTGGTGATCGAGTGAAGATAGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACA 1378
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1383 TATGCCCGGTGATCGAGTGAAGATTGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACA 1442
Query 1379 AGGGATGAGGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTCAGG- 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1443 AGGGATGAGGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTG-GGA 1501
Query 1438 CTATCATCGAAT-A--A---GGTTTTAGAGAGTTTCATATAGTG 1475
| ||| |||||| | | ||||||||||||||||||||||||
Sbjct 1502 CGATCCTCGAATGATTATAAGGTTTTAGAGAGTTTCATATAGTG 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5