BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946140
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20320.1 | Symbols: | CTP synthase family protein | chr4:10... 2928 0.0
AT1G30820.1 | Symbols: | CTP synthase family protein | chr1:10... 874 0.0
> AT4G20320.1 | Symbols: | CTP synthase family protein | chr4:10974579-10979464
FORWARD LENGTH=2347
Length=2347
Score = 2928 bits (1585), Expect = 0.0
Identities = 1745/1824 (96%), Gaps = 3/1824 (0%)
Strand=Plus/Plus
Query 12 GGAAGGAAGATGAAGTATGTGGTTGTCTCAGGAGGAGTAGTGAGTGGACTCGGAAAAGGA 71
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 80 GGAA-GAAGATGAAGTATGTGGTTGTTTCAGGAGGAGTAGTGAGTGGACTCGGCAAAGGA 138
Query 72 GTCACGGCAAGTAGTATCGGACTCATCCTCAAATCCTGTGGCTTCCGAGTCACCGCCATT 131
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GTCACGGCAAGTAGCATCGGACTCATCCTCAAATCCTGTGGCTTCCGAGTCACCGCCATT 198
Query 132 AAAATAGATCCTTACTTAAATATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAA 191
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 199 AAAATCGATCCTTACTTAAACATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAA 258
Query 192 GTTTACGTCTTGGACGATGGTGGCGAGGTTGATCTTGATCTTGGGAACTATGAGAGGTTC 251
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 259 GTTTACGTCTTGGATGATGGTGGCGAGGTTGATCTGGATCTTGGGAACTATGAGAGGTTC 318
Query 252 ATGGATATTAAGCTGACCAGTGAAAACAACATAACTACCGGAAAAGTTTATAAGCATGTG 311
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 319 ATGGATATTAAGCTGACTAGTGAAAACAACATAACTACTGGAAAAGTTTATAAGCATGTG 378
Query 312 CTTGAGAAAGAGAGGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCATATT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CTTGAGAAAGAGAGGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCATATT 438
Query 372 ACTGATGCTATTCAAGAATGGATTGAGCGTGCTGCTAGGATTCCTGTAGATGGACAGTCA 431
||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 439 ACTGATGCTATTCAAAAATGGATTGAGCGTGCAGCTAGGATTCCAGTGGATGGACAGTCA 498
Query 432 GGTCCAGCTGATGTTTGTGTCATTGAACTTGGAGGAACTATAGGAGATATAGAGTCCATG 491
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 499 GGTCCAGCTGATGTTTGTGTCATAGAACTTGGAGGAACTATAGGAGATATAGAGTCCATG 558
Query 492 CCTTTTATTGAAGCTCTTGGGCAGTTCTCATACCGCGTAGGCACTGACAATTTTTGCTTG 551
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 559 CCTTTTATTGAAGCTCTTGGGCAGTTCTCATATCGCGTGGGCACTGACAATTTTTGCTTG 618
Query 552 ATCCATGTCAGTCTTGTGCCTGTATTGAATGTTGTTGGTGAACAGAAGACTAAACCAACG 611
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 ATCCATGTCAGTCTTGTGCCTGTATTGAATGTTGTTGGTGAACAGAAGACTAAACCAACT 678
Query 612 CAACATAGCGTTCGAGACTTAAGAGGCCTTGGCTTGAGCCCTAATATCTTGGCTTGCCGA 671
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CAACATAGCGTTAGAGACTTAAGAGGCCTTGGCTTGAGCCCTAATATCTTGGCTTGCCGG 738
Query 672 AGCACAAAGCCACTTGAAGATAATGTGAAGGCCAAACTCTCTCAGTTTTGCCATGTCCCG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGCACAAAGCCACTTGAAGATAATGTGAAGGCCAAACTCTCTCAGTTTTGCCATGTCCCG 798
Query 732 ATGGAAAACGTTGTCACTCTCTACGATTGTCCCAACATTTGGCACATTCCATTGCTTCTC 791
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 799 ATGGAAAACGTTGTCACTCTCTACGATTGTCCCAACATTTGGCACATACCATTGCTTCTC 858
Query 792 AAAGAACAAAAGGCACACGAGGCGATTTTGCGTGTCTTGAACCTTAAAGGAGTTGCAAAG 851
||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 859 AAAGAACAAAAGGCACACGAGGCTATTTTCCGTGTCTTGAACCTTGAAGGAGTTGCAAAG 918
Query 852 GAGCCTGCATTAGAGGAATGGTCTTTGATGGCTAAAATGACAGACAAGTTGCATGTTCCG 911
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 919 GAGCCTGCATTAGAGGAATGGTCTTTGATGGCTAAAATGACCGACAAATTGCATGTTCCG 978
Query 912 GTAAGAATTGCTGTGGTTGGAAAATATACTGAGCTTTTGGATTCTTATCTGTCGATTCAC 971
|||||||||||||||||||| ||||| |||||||| |||||||| ||||| || ||||||
Sbjct 979 GTAAGAATTGCTGTGGTTGGGAAATACACTGAGCTCTTGGATTCGTATCTTTCCATTCAC 1038
Query 972 AAGGCTCTCTTGCACGCTTCTGTGGCAAGGGGCAAGAAACTTGTCATAGATTGGATTTCA 1031
|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 1039 AAGGCTCTCTTGCACGCTTCTGTGGCTAGGCGCAAGAAACTTATCATAGATTGGATTTCA 1098
Query 1032 GCTAGTGATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGAATGCATATAAGGCCGCCTGG 1091
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1099 GCTAGTGATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGGATGCATATAAGGCCGCCTGG 1158
Query 1092 AAGTTACTCAAGGGTGCTGATGGTATTCTTGTGCCGGGAGGTTTTGGCAATAGAGGTGTA 1151
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1159 AAGTTACTCAAGGGTGCTGATGGCGTTCTTGTGCCGGGAGGTTTTGGCAGTAGAGGTGTA 1218
Query 1152 GAAGGAAAGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAGTTCCATACCTCGGTATC 1211
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1219 GAAGGAAAGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAATTCCATACCTTGGTATC 1278
Query 1212 TGTCTAGGGATGCAACTCGCTGTGATTGAGTTTGCCAGAACTGTACTAGGTTTGCCAGAT 1271
|||||||| ||||||||||||||||| |||| ||| ||||| |||| |||||| |||||
Sbjct 1279 TGTCTAGGTATGCAACTCGCTGTGATCGAGTATGCAAGAACCATACTCGGTTTGGCAGAT 1338
Query 1272 GCAAACAGCACTGAACTTGATCCCAACACCAAAAACCCATGTGTTATTTTCATGCCTGAG 1331
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1339 GCAAATAGCACTGAACTTGATCCCAACACCAAAAACCCCTGTGTTATTTTCATGCCTGAG 1398
Query 1332 GGCTCGAAAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACCTACTTTCAG 1391
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1399 GGGTCGAAAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACTTATTTTCAT 1458
Query 1392 TCTAAAGACTCCAAATCAGCAAAACTATATGGGAACAGAGGTTTTGTAGATGAAAGACAC 1451
||||| |||||||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1459 TCTAAGGACTCCAAATCAGCAAGACTATATGGGAACAAAAGTTTTGTAGATGAAAGACAC 1518
Query 1452 CGACACAGATATGAGGTAAATCCAGACATGGTTCCACGTTTCGAGAGCTCTGGACTCACA 1511
||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1519 CGACACAGATATGAGGTGAATCCAGCCATGGTTCCACGTTTTGAGAGCTCTGGACTCACA 1578
Query 1512 TTCACAGGAAAAGATGAGAC-GGGTCAGCGAATGGAGATCTTTGAACTGCCTAATCATCC 1570
|||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||| |||||
Sbjct 1579 TTCACAGGAAAAGACGAGACAGGG-CAGCGAATGGAGATCATTGAACTGCCTAACCATCC 1637
Query 1571 GTTTTACATTGGAGCTCAGTTCCATCCCGAGTACAAATCAAGACCCGGAAAACCATCTCC 1630
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GTTTTACGTCGGAGCTCAGTTCCATCCCGAGTACAAATCAAGACCCGGAAAACCATCTCC 1697
Query 1631 TCTGTTTCTAGGACTAATTGGAGCAGTTAGTGGAGAACTAGACACTGTACTGCAACAAAG 1690
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 1698 TCTGTTTCTAGGACTAATTGGAGCAGCTAGTGGAGAACTAGACACTGTTCTGCTACAAAG 1757
Query 1691 CTGCCAAGAAACCGTCGTTCCACGTTCTCTACCCAACGGAAAACTTGAGAGAGTTTACTG 1750
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1758 CTACCAAGAAACCGTCGTTCCACGTTCTCTACCCAACGGAAAACTAGAGAGAGTTTACTG 1817
Query 1751 GAAAGGTGCAGCGAAAAAGCCAGTCAGTGTTGTGTACAGTTTATGTGATCGTGTCTACTC 1810
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 GAAAGGTGCAGCGAAGAAGCCAGTCAGTGTTGTGTACAGTTTATGTGATCGTGTCTACTC 1877
Query 1811 ATGAACAACATCTCTGCATCAACA 1834
|||||| | | ||||||||||||
Sbjct 1878 GTGAACACCGTATCTGCATCAACA 1901
> AT1G30820.1 | Symbols: | CTP synthase family protein | chr1:10944913-10949458
REVERSE LENGTH=2480
Length=2480
Score = 874 bits (473), Expect = 0.0
Identities = 1311/1701 (77%), Gaps = 115/1701 (7%)
Strand=Plus/Plus
Query 12 GGAAGGAAGATGAAGTATGTGGTTGTCTCAGGAGGAGTAGTGAGTGGACTCGGAAAAGGA 71
|||| |||||||||||| ||| |||| ||||||| || ||||||||| | || ||||||
Sbjct 332 GGAA-GAAGATGAAGTACGTGCTTGTAACAGGAGGTGTTGTGAGTGGATTAGGGAAAGGA 390
Query 72 GTCACGGCAAGTAGTATCGG-ACTCATCCTCAAATCCTGTGG-CTTCCGAGTCACCGCCA 129
|| || ||||||||||| || || |||| ||| | ||||| ||| ||||| || | |
Sbjct 391 GTAACAGCAAGTAGTATTGGTGTTC-TCCTTAAAGCTTGTGGTCTT-CGAGTTACTTCTA 448
Query 130 TTAAAATAGATCCTTACT-TAAATATTGATGCTGGGACCATGTCACCTA-TTGAACATGG 187
| ||||| |||||||| | | || | ||||||||| || ||||| || | ||||||| ||
Sbjct 449 TCAAAATCGATCCTTA-TCTGAACACTGATGCTGGAACTATGTCTCC-ATTTGAACACGG 506
Query 188 TGAAGTTTACGTCTTGGACGATGGTGGCGAGGTTGATCTTGATCTTGGGAACTATGAGAG 247
|||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| || ||
Sbjct 507 TGAAGTTTTTGTCTTGGACGATGGTGGTGAGGTGGATCTTGATCTTGGAAACTACGAAAG 566
Query 248 G-TTCATGGATATTAAGCTGACCAGTGAAAACAACATAACTAC-CGGAAAAGTTTATAAG 305
| ||| | ||||| || | || || || || ||||| ||||| |||||| ||||| ||
Sbjct 567 GTTTC-TAGATATCAAATTAACAAGAGACAATAACATCACTACTGGGAAAA-TTTATCAG 624
Query 306 CATGTGCTTGAGAAAGAGAGGAGAGGAGATTATCTTGGG-AAGACTGTTCAGGTTGTTCC 364
||||| ||| |||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 625 CATGTTATTGCTAAAGAGAGGAAAGGAGATTAT-TTGGGAAAGACTGTTCAGGTTGTTCC 683
Query 365 TCATATTACTGATGCTATTCAAGAATGGATTGAGCGTGCTGCTAGG--ATTCCTGTAGAT 422
|||| | |||||||| |||||||| ||||| ||| | | ||| || |||||||| |||
Sbjct 684 TCATGTCACTGATGCAATTCAAGATTGGATCGAGAGAGTTGC--GGTTATTCCTGTTGAT 741
Query 423 GGA-CAGTCAGG-TCCAGCTGATGTTTGTGTCATTGAACTT-GGAGGAACTATAGGAGAT 479
||| || ||| ||| ||||||||||| || |||||| || || ||||| ||||| |||
Sbjct 742 GGAGAAG--AGGATCCTGCTGATGTTTGCGTTATTGAA-TTAGGTGGAACAATAGGTGAT 798
Query 480 ATAGAGTCCATGCCTTTTATTGAAGCTCTTGGGCAGTTCTCATACCGCGTAGGCACTGAC 539
|| || ||| ||||||||| || || ||||| || ||||| ||||| |||||| | |
Sbjct 799 ATTGAATCCGCGCCTTTTATCGAGGCGCTTGGTCAATTCTCTTACCGTGTAGGCCCAGGG 858
Query 540 AATTTTTGCT-TGATCCATGTCAGTCTTGTGCCTGT-ATTGAATGTTGTTGGTGAACAGA 597
||||| || | || |||||||||| || |||||||| || |||||||||||||||||||
Sbjct 859 AATTTCTG-TCTGGTCCATGTCAGCCTCGTGCCTGTGCTT-AATGTTGTTGGTGAACAGA 916
Query 598 AGACTAAACCAACGCAACATAGCGTTC--GAGACTTAAGAGGCCTT-GGCTTGAGC-CCT 653
| ||||| || || || ||||| | || | | | || |||| || ||||||| | ||
Sbjct 917 AAACTAAGCCGACACAGCATAGTG-TCAAGGGGC-TACGAGG-ATTGGGCTTGA-CGCCG 972
Query 654 AATATCTTGGCTTGCCGAAGCACAAAGCCACTTGAAGATAATGTGAAGGCCAAACTCTCT 713
||||||| ||||| | ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 973 GATATCTTAGCTTGTAGGAGCACAAAGCCACTTGAAGATAATGTGAAAGAAAAACTAGCT 1032
Query 714 CAGTTTTGCCATGTCCCGATGGAAAACGT-TGTCACTCTCTACGATTGT-CCCAACATTT 771
|||||||||||||||||| | || | | | |||||||||| ||| || ||||||||||
Sbjct 1033 CAGTTTTGCCATGTCCCGCTTGAGTATATCT-TCACTCTCTATGAT-GTTCCCAACATTT 1090
Query 772 GGCACATTCCATTGCTT-CTCAAAGAA-CA-AAAGGCACA-CGAGGCGATTTTGC--GTG 825
||| ||||| ||| || || |||| | || |||| | || | ||| || | |||
Sbjct 1091 GGCGTATTCCTTTG-TTGCT-AAAGGATCAGAAAG-CTCATCT-GGCAATCTCAAAAGTG 1146
Query 826 TCTTGAACCTTAA-AGGAGTTGCA-AAGGAGCCTGCAT-TAGAGGAATGGTCTTTGATG- 881
|| || ||| || | || | || |||||| | | ||| ||||||| ||| | |
Sbjct 1147 -CTC-AATCTTGCTAGTA-TT-CTTAATGAGCCTTC-TCTAGGGGAATGGACTTCCA-GA 1200
Query 882 GCTAAA--ATGACAGACAAGTTGCATGTTCCGGTAAGAATTGCTGTGGTTGGAAAATATA 939
||| || ||| ||||| || ||||| ||||| ||||| ||||| || || |||||||
Sbjct 1201 GCTGAATTATGT--GACAATTTACATGTGCCGGTGAGAATCGCTGTTGTGGGGAAATATA 1258
Query 940 CTGAGCTT-T-TGGATTCTTATCTGTC-GA-TTCACAAGGCTCTCTTGCACGCTTCTGTG 995
| | || | | || || ||||||| || | || | ||||||||||| || |||||||||
Sbjct 1259 CAG-GCCTCTCTG-ATGCTTATCTCTCTGTCTT-A-AAGGCTCTCTTACATGCTTCTGTG 1314
Query 996 GCAAGGGGCAAGAAA-CTTGTCA-TAGATTGGATTTCAGCTAGTGATCTTGAGCAAGGTG 1053
|| | |||| ||| || || | | |||||| || ||||| ||||||| || |||
Sbjct 1315 GCTTGTCGCAA-AAAGCTCGT-AGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAAGAAA 1372
Query 1054 CAAA-AAAGGAGAATCC-GAATGCATATAAGGCCGCCTGGAAGTTACTCAAGGGTGCT-G 1110
| | |||| ||||||| || ||| ||||| || || |||||||| || ||||||| | |
Sbjct 1373 CTGAGAAAG-AGAATCCAGA-TGCGTATAAAGCTGCTTGGAAGTTGCTAAAGGGTG-TAG 1429
Query 1111 ATGGTATTCTTGTGCCGGGAGGTTTTGGCAATAGAGGTGTAGAAGGAAAGATGCTGGCAG 1170
|||| |||||||| || ||||||||||| ||||||| || ||||| ||||| || || |
Sbjct 1430 ATGGAATTCTTGTACCTGGAGGTTTTGGTGATAGAGGAGTGGAAGGGAAGATTCTTGCTG 1489
Query 1171 CGAAA-TACGC-CAGAGAAAACAGAGTTCCATACCTCGGTATCTGTCTAGGGATGCA-AC 1227
| ||| || || | | ||||||| | | || | ||||||||| ||||| || ||||| |
Sbjct 1490 C-AAAGTATGCAC-GTGAAAACAAAATCCCGTTCCTCGGTATTTGTCTTGGAATGCAGAT 1547
Query 1228 TCGCTGTGATTGAGTTTGC-CAGAACTGTACTAGGTTTGCCAGATGCAAACAGCACTGAA 1286
| ||||| || |||||||| | || | || ||| | |||| ||| ||||||||||| |||
Sbjct 1548 T-GCTGTCATCGAGTTTGCAC-GATCAGTTCTAAGCTTGCAAGACGCAAACAGCACAGAA 1605
Query 1287 CTTGATCCC--AACACCAAAAACCCATGTGTTATTTTCATGCCTGAGGGCTCGAAAACGC 1344
|| | ||| || |||||| | || || | ||||||||||| ||||| || ||||| |
Sbjct 1606 TTTAA-CCCTGAA-ACCAAACATCCTTGCATCATTTTCATGCCCGAGGGTTCTAAAACTC 1663
Query 1345 ATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAA-CC-TACTTTCA--GTCTAAAGAC 1400
||||||||||||||||| | ||||| ||||||| || || | ||| || ||| ||||||
Sbjct 1664 ATATGGGAGGCACTATGCGCTTAGGATCAAGAA-AATCCAT-CTT-CAATGTC-AAAGAC 1719
Query 1401 TCCAAATCAGCAAAACTATATGGGAACAGAGGTTTTGTAGATGAAAGACACCGACACAGA 1460
|||||| ||||||||||| | ||||| | | ||||||||||| || || || ||||||
Sbjct 1720 AGCAAATCTGCAAAACTATACGAGAACAAAAGCTTTGTAGATGAGAGGCATCGTCACAGA 1779
Query 1461 TATGAGGTAAATCCAGACATGGTTCCACGT-TTCGAGA-G-CTCTGGACTCACATTCACA 1517
|| ||||| ||||| ||||||||| ||| || |||| | | | || || | ||| |
Sbjct 1780 TACGAGGTGAATCCGGACATGGTTGAACGCCTT-GAGAAGGC-C-GGTCTTTCTTTCGCT 1836
Query 1518 G-GAAAAGATGAGACGGGTCAG-CGAATGGAGATCTTTGAACTGCCTAATCATCCGTT-T 1574
| |||| ||||| || || || || ||||||||| ||||||| || || ||||| || |
Sbjct 1837 GCGAAA-GATGAAACTGG-CAAACGCATGGAGATCATTGAACTTCCAAACCATCCTTTCT 1894
Query 1575 TACATTGGAGCTCAGTTCCATCCCGAGTACAAATCAAGACCCGGAAAACCATCTCCTCTG 1634
| || || ||||| ||||| ||||||| |||||| |||||||| ||| | |||||||||
Sbjct 1895 TT-ATCGGTGCTCAATTCCACCCCGAGTTCAAATCCAGACCCGGGAAAGCTTCTCCTCTG 1953
Query 1635 TTTCTAGGACTAATTGGAGCA 1655
||| |||| || |||| ||||
Sbjct 1954 TTTTTAGGGCTCATTGCAGCA 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90762585360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5