BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946141

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43530.1 | Symbols:  | Helicase protein with RING/U-box doma...   468    2e-131


> AT5G43530.1 | Symbols:  | Helicase protein with RING/U-box domain 
| chr5:17489327-17494830 FORWARD LENGTH=3834
Length=3834

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 281/295 (95%), Gaps = 0/295 (0%)
 Strand=Plus/Plus

Query  11    GATTCTGCTCATGTCTCTGAAAGCTGGAGGAGTTGGTCTGAATCTAACCGCAACTTCAAG  70
             ||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct  3540  GATTCTGCTTATGTCTCTGAAAGCTGGAGGAGTCGGTCTGAATCTAACTGCAGCTTCAAG  3599

Query  71    TGTCTTCTTAATGGATCCATGGTGGAATCCGGCGGTGGAAGAGCAAGCGATCATGAGAAT  130
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  3600  TGTCTTCTTAATGGATCCATGGTGGAATCCAGCGGTGGAAGAGCAAGCGATCATGAGAAT  3659

Query  131   TCATCGAATCGGGCAGAAACGAACAGTATTCGTCAGAAGATTCATTGTCAAGGATACAGT  190
             ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  3660  TCATCGAATAGGGCAGAAACGAACGGTATTCGTCAGAAGATTCATTGTCAAGGATACAGT  3719

Query  191   GGAGGAACGAATGCAGCAAGTTCAGGCAAGGAAGCAGAGGATGATTGATGGAGCTTTGAC  250
             ||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct  3720  GGAGGAACGGATGCAGCAAGTTCAGGCAAGGAAGCAGAGGATGATTGCCGGAGCTTTGAC  3779

Query  251   CGATGAAGAAGTCCGGTCGGAAAGACTTGAGGAGCTCAAAATGTTGTTCCGATGA  305
              ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct  3780  AGATGAAGAAGTCCGGTCTGCAAGACTTGAGGAGCTTAAAATGTTGTTCCGATGA  3834



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15180860198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5