BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946143
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20300.2 | Symbols: | Protein of unknown function (DUF1639)... 1764 0.0
> AT4G20300.2 | Symbols: | Protein of unknown function (DUF1639)
| chr4:10955438-10959213 FORWARD LENGTH=1782
Length=1782
Score = 1764 bits (955), Expect = 0.0
Identities = 1048/1090 (96%), Gaps = 17/1090 (2%)
Strand=Plus/Plus
Query 4 GGTTTTCACTTGGGTATAATGATGAGGTATCAGAGAGTAAGCCCAGATTGTCTTCCTCTT 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGTTTTCACTTGGGTATAATGATGAGGTATCAGAGAGTAAGCCCAGATTGTCTTCCTCTC 417
Query 64 ACAAATGGAGGTAAGAAGCCATACTTGCGACCATCACCTTCAAGAGCAACAAACGAAGAC 123
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 418 ACAAATGGAGGTAAGAAGCCTTACTTACGACCATCACCATCAAGAGCAACAAACGAAGAC 477
Query 124 ACCACCACCACCACCGTTATTACCACAACTTCCATCGCCGGAAGAGGATTTAACGGCGGA 183
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 478 ACCACCACCACCACCGTCATTACCACAACCTCAATCGCCGGAAGAGGATTTAACGGCGGA 537
Query 184 TCATGCACAACCACCA-C--CAACACCTCATCTTTAGACGGAGTCCCCAAAGGATTCCGA 240
|||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 TCATGCACAACCACCACCAACAACACCTCATCTCTAGACGGAGTCCCCAAAGGATTCCGA 597
Query 241 TTCAGATCCACTC--CA-CAACAACAACAACAAGATCCTAGTCCTAGCCGTCGCGGCGGA 297
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCAGATCCACTCAACAGCAGCAACAACAACAAGATCCTAGTCCTAGCCGTCGCGGCGGT 657
Query 298 GATGTACTGTTACAGTGGGGACAACGAAAGCGATCGAGAGCCTCTAGAGCTGAGATCCGA 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GATGTACTGTTACAGTGGGGACAACGAAAACGATCGAGAGCCTCTAGAGCTGAGATCCGA 717
Query 358 TCCACCACCA-C--CACAACCACCGCCGATGATTCTTCGTCTTCTTCAGGACAAGGTAAG 414
|||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 TCCACCACCACCATCACAACCACCGCCGATGATTCTTCGTCTTCTTCAGGTCAAGGTAAG 777
Query 415 ATTCAATCTAACAAGCTC-CAAAGAAGATCGATGAATCCTTCTATGCCACCACCACCACC 473
|| ||||| ||||| | | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 ATACAATCAAACAAAC-CGCAAAGAAGATCGATGAATCCTTCTATGCCACCTCCACCACC 836
Query 474 AGCTCCGCCGATTTTCTCTGGCCGGAGTACAAACCCTAGAAACGGTTTCGTTATCGGCAA 533
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGCTCCGCCGATTTTCTCGGGCCGGAGTACAAACCCTAGAAACGGTTTCGTTATCGGCAA 896
Query 534 GGAATCTTTCTTCCCTTCCAGGAATCTAGAAGATCGATCAGCAAACGGATCACCATCAAG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGAATCTTTCTTCCCTTCCAGGAATCTAGAAGATCGATCAGCAAACGGATCACCATCAAG 956
Query 594 GAACAACATCAACGGCCGTATGATATCCAGATCGGGTGGCTCAAAGCGATCTCCACCGTC 653
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAACAACATAAACGGCCGTATGATATCCAGATCGGGTGGCTCAAAGCGATCTCCACCGTC 1016
Query 654 TCCAGACCAAATCGAGAAGAGATCAAGCGTTAGAGATCACAGACAAAACGGGTTTGATCA 713
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1017 ACCAGACCAAATCGAGAAGAGATCAAGCGTTAGAGATCAGAGACAAAACGGGTTTG---A 1073
Query 714 TCATCATCATCAACAACAACACCAAAGAGTGAACAGATCAGAATCAACGGCTCAGGGTCA 773
|||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TCATCA--A-CAACAACAACATCAAAGAGTGAACAGATCAGAATCAACGGCTCAGGGTCA 1130
Query 774 TCAAGAAGTGGAGATAAATGGAGAAAGAGAGAAAGCAACGCAAGAGTGGCCAAGGATCTA 833
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1131 TCAAGAAGTGGAGATAAATGGAGAAAGAGAGAAAGCAACGCAAGAGTGGCCGAGGATCTA 1190
Query 834 CATTGCTTTGTCTAGGAAAGAGAAGGAAGAAGATTTCTTGGTTATGAAAGGAACTAAGCT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CATTGCTTTGTCTAGGAAAGAGAAGGAAGAAGATTTCTTGGTTATGAAAGGAACTAAGCT 1250
Query 894 TCCTCATAGACCCAGGAAACGAGCTAAGAACATTGATAAAGCCCTCCAGTTTTGTTTTCC 953
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1251 TCCTCATAGACCCAGGAAACGAGCTAAGAACATTGATAAAGCCCTTCAGTTTTGTTTTCC 1310
Query 954 AGGGATGTGGTTATCTGATTTGACCAAGAACCGTTATGAAGTTAGGGAGAAGAAAAATGT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AGGGATGTGGTTATCTGATTTGACCAAGAACCGTTATGAAGTTAGGGAGAAGAAAAATGT 1370
Query 1014 GAAGAAGCAGCAGAAACGGAGAGGATTGAAAGGCATGGAGAATTTGGACACCGACTCTGA 1073
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1371 GAAGAAGCAGCAGAAACGGAGAGGATTGAAAGGCATGGAGAATATGGACACCGACTCCGA 1430
Query 1074 GTAAATTTTT 1083
||||||||||
Sbjct 1431 GTAAATTTTT 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5